Sequence of DPV Satsuma dwarf virus
Satsuma dwarf virus genomic RNA (RNA1) for polyprotein, complete cds.
ACC No: AB009958
Dated: 2005-01-19 | Length: 6794 | CRC: 1771526376
!!NA_SEQUENCE 1.0
ID AB009958 standard; genomic RNA; VRL; 6794 BP.
XX
AC AB009958;
XX
SV AB009958.2
XX
DT 09-APR-1999 (Rel. 59, Created)
DT 19-JAN-2005 (Rel. 82, Last updated, Version 4)
XX
DE Satsuma dwarf virus genomic RNA (RNA1) for polyprotein, complete cds.
XX
KW .
XX
OS Satsuma dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sequiviridae;
OC SDV-like viruses.
XX
RN [1]
RP 1-6794
RA Iwanami T., Kondo Y.;
RT ;
RL Submitted (19-DEC-1997) to the EMBL/GenBank/DDBJ databases.
RL Toru Iwanami, National Institute of Fruit Tree Science, Department of
RL Citriculture,Okitsu; Okitsu, Shimizu, Shizuoka, 424-02, Japan
RL (E-mail:tiwsw37@okt.affrc.go.jp, Tel:81-543-69-7110, Fax:81-543-69-2115)
XX
RN [2]
RX MEDLINE; 99190442.
RX PUBMED; 10092021.
RA Iwanami T., Kondo Y., Karasev A.V.;
RT "Nucleotide sequences and taxonomy of satsuma dwarf virus";
RL J. Gen. Virol. 80:793-797(1999).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6794
FT /db_xref="taxon:47416"
FT /mol_type="genomic RNA"
FT /organism="Satsuma dwarf virus"
FT /isolate="S-58"
FT /segment="1"
FT CDS 301. .6546
FT /codon_start=1
FT /db_xref="GOA:Q9WAL8"
FT /db_xref="InterPro:IPR000605"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q9WAL8"
FT /note="this polyprotein contains NTP-binding domain,
FT protease and RNA polymerase."
FT /transl_table=1
FT /product="polyprotein"
FT /protein_id="BAA76746.1"
FT /translation="MEIYGFSPLSFQDTESWKNSAFAACRGCKTYPIEEVGTDGSVRIR
FT ELPVGLVLKGVMAQYRSILWTQFVADPATTTVDRKSFDFWLFCRRAEAAQERAFRARQS
FT KRAAKAAALDAEGLIDRSYKGRTYKVSTRGLSWKSVRAAQKAARNAAKNFGFAISANPF
FT SALSALPSEGKGLSAGETPATVAEVAPQCFWAALRSLKREFSETPVEDLPFLGLVLPAL
FT PQRNGELARTLRAQLRAHQAARVVASGVSLREIPRRTTTTVKVVVPRVTIPVVTFNGAV
FT LHHPKHPVIVALLKRVTIRAKPICERRTYVRLVDGPGLFPSPRTPTLDLGFMEKVSELA
FT TMPGDSIEKCIAIKCILSNDYNFKEDADMGDVLLSLQSKYTGGGDTAEHRGFISGALYG
FT AGVCVVTSAWKFLDATLHASQIGTQISQILDYIQSGLAWLSSSYASIANFFTKGKVYIM
FT ECLELVKAKLPSYLFSAEVGRYILLLLGVFLCLGLVNSLIYSVAPQYSLSFGTVCKISL
FT GALALVGLGDLVAYLFNSPGAKLRAFVNIVCNMCGCKNFFAPSSDGEERSGFSVLSMMG
FT AICALQSLLPANVSRFSWDCGKWAQTFKTGFDCHEKFATVCESLSVWLLSKVGLFKSSE
FT SQAMQTILLSSGINTCGWLEKVAAFHSDVHSSQICIPDLLLRARQLIETGDTISDLLSN
FT STVSLSFLLRERIKLALRELKEDHTQLQLAVDVSVSSECPFVLFFAGDSGVGKSTAMKK
FT FREEVLDKLGYPKTARFYPRNPGEKFWSGYLRHTAVIYDDFAQIPQGDMTYDEAELIRI
FT VTNAVVTVPMAIAEEKGRTFRSKFVFACTNRYCESEDAPLADEMAFRRRRHLYIHVARK
FT PGVEPGPRGVDNLEFSEMDNRDSNGEPAYQLNDQGKRVLINQKLTYDQLLQLYFERYQA
FT FKVLEGQLEGSVARAPSSSNYEGCDNWWTLVGSEAKFEAVYFNGEPVSEDDQLTQLGNY
FT KTRYDILRARVILESIDYADCDFIIKNFSAMGEGIYHADPEVNATGQRHFSAMSPVTRR
FT LICSCLKTRREDEIKSHSLLSKFKSLLTVPVDAWKAAPAWFKCISLLLVAGGVGYALCR
FT AISGIIGIFRKGPAAASLALFSGGIGAVLRGDSPDDPREERDNPDVIVTKGRGKAIWAG
FT AEIPEALEALRKSQVVLMGTGRKGEPVMCSALPITSHSVLCTTHEIEAFDPNQNMSLIV
FT NNSIYSFVLIPGAIMYKRYDQPNLVDKVHELVRVDLPKNKGFSLNARAQFSEDFYDNGT
FT AMKCWVVPNKNPAVADIMRKVDCEKSSQIIDIFASELSRSSGCEPVRQTQRFIYADGPA
FT LNGHCGRLLCANLAGHWRVIGMCAGEGKNRAGVTKALYADIPHEFLRADNLNAVQRGAE
FT LDAAILDRFSIPISECRKELTPMTTRLGYVVGQYPRALRKTSIVPSIIHDNLWRKPETE
FT PTILGKIDDRSPFPYDPYATIGEKFVQEVGPIDLSVGSDASLVVANIGSSWKAVGKPQC
FT PTVLTWEVAINGDAAIPYCERLPLSTSEGYPDSIQRNFGEKGKKRFFDLKGENVRVPTP
FT ALMEELEVLERELQKEEVCLTCINTACAKDEKTAPKKVRVQPKTRIFEILPFQINIIIR
FT RYLMFWMQLLMVAHDELPSKVGINVYSESWDRLLGRHTRLANHFTGDYSGFDTSTPRVL
FT VYAIIDKINELADDGEVNQRTRRNIIRFVLNRYLISDGVLYEIHGGTPSGFAPTVMINS
FT VVNEFYLKWSWIGLLKEAGYANQATLYAFHEATEISLYGDDNFVSVATPVASVYNLTTI
FT SNFLGRIGVKLGDGAKTGTIKPFIPLEEVDFLKRQFVADSGSTAILCPLKKISIEERLF
FT YVRGGQDEIAALELNIATALCEAFFHGKEYFSFLEGKIIEAMRKSGVALSRPLPTMESV
FT RAWYMSQRGNTKIRSPSFEGLGTMSGILNIGLAEARSVGGVACFSGIEFRGRSDDHLMV
FT IPTYIPGGWRTKQQQTYISFVRDSEKMAQVIKRVAHFSTVVATDKSMAYLVAICIAYSR
FT GSISRMEVRCHVQNLKVAEMLLCNQICNFL"
XX
SQ Sequence 6794 BP; 1655 A; 1499 C; 1688 G; 1952 T; 0 other;
AB009958 Length: 6794 January 25, 2005 09:06 Type: N Check: 9483 ..
1 ttgattcaag cgaagcagaa gccctgcaac aaaactaaat cttgtccctt
51 ctttctctct ctctaagcga caatcttttc ttgctttcaa atgacttctt
101 tcttctcttg ctctatgatg tgtgggatag cgcccacact acgaaactag
151 ggatagcgcc ctagctccga ttattgggat agcgcccaat attttctgtt
201 aatatttcga tattttcatt ttgtaatttc gattacttat atataataaa
251 aaccaaaaag attttcttat ttccttaatt tcttttttgt ttgctttttc
301 atggagatct acggattctc ccccctctcc ttccaggaca ccgagtcctg
351 gaagaactct gctttcgcag cctgccgagg ctgcaagacc taccccatcg
401 aggaggtagg tactgacgga tccgtgagga tccgggagct cccggtgggg
451 ctcgtgctga agggcgtcat ggcccaatac cggtccattt tatggaccca
501 atttgtggcg gaccccgcca ctaccaccgt ggaccggaag tcctttgact
551 tctggctctt ttgccgccgt gctgaggcgg cccaggaacg agcctttagg
601 gctcgtcagt ccaagcgagc cgccaaggcc gctgccctcg atgctgaggg
651 cttaatcgat cgctcctaca aggggcgaac ttataaggtc tccacaagag
701 gcctgtcctg gaagtctgtg cgagcagcac agaaggccgc acgaaatgcg
751 gcaaaaaatt ttggatttgc catctcggcg aatcctttct ctgctctttc
801 cgccctcccg tctgaaggga agggcctttc tgcaggtgag actcctgcta
851 ctgttgctga ggtggcacct cagtgctttt gggccgcact gcggtcctta
901 aaaagggagt tttctgagac tcccgttgaa gacctgccct ttcttgggtt
951 ggtcttgccc gctctgcccc agcgtaatgg ggaacttgct cgcactttgc
1001 gggctcaatt gcgcgcgcac caagctgcgc gcgtggttgc aagcggggtt
1051 tccctgaggg aaatcccccg ccgcactacg accaccgtaa aggtggttgt
1101 tccacgcgtg accattcctg tggtcacctt taatggtgcg gtgttgcatc
1151 atcctaaaca cccggtgata gttgctctcc ttaagagagt gactatcaga
1201 gctaaaccta tttgcgagcg ccgaacttat gtgcgcctgg ttgatggtcc
1251 tggccttttc ccctctccac gaacccccac tctagatcta gggttcatgg
1301 agaaggtctc tgagttagct accatgcctg gcgacagcat tgaaaagtgt
1351 atcgcaatta aatgcatcct ctctaatgat tacaatttta aggaggatgc
1401 tgatatgggt gatgttctac tttccctaca atccaaatac actggtggtg
1451 gagacactgc ggaacaccgt ggatttatat ccggtgcact ctacggtgct
1501 ggagtttgcg ttgttacttc cgcttggaag tttctggatg cgacgctcca
1551 tgccagccaa ataggcactc agatttctca aattcttgat tatatacaat
1601 ctgggttagc ctggctctcc agtagttacg cttctattgc caacttcttt
1651 acgaaaggca aggtttatat tatggagtgt ttagaacttg ttaaagccaa
1701 attgccttcg tatcttttct ccgcagaagt tggtaggtac atattgctac
1751 ttttaggagt ttttctttgt ttgggattag ttaatagtct tatttacagt
1801 gtggcgcctc aatatagtct ctcttttggg acggtatgta agatatctct
1851 tggcgctttg gcactagttg gtttgggcga cttagtcgcc tatttgttta
1901 atagtccggg agcgaaactc cgcgcatttg taaatattgt gtgcaatatg
1951 tgcggttgta aaaatttctt tgctccctct agtgatggcg aagaacggtc
2001 gggcttttct gttctctcaa tgatgggagc catctgtgct ctgcaatctt
2051 tactaccggc caacgtgtcc cgcttttcat gggactgtgg aaaatgggcc
2101 cagactttca aaactgggtt cgactgccat gaaaagttcg caactgtgtg
2151 cgaatctttg tccgtctggc ttctttcgaa agttggttta ttcaaatcat
2201 ctgagagcca ggctatgcaa accatcctac tctcctccgg cattaacact
2251 tgcggatggt tggaaaaagt tgcagctttt cactctgacg tgcattcctc
2301 tcaaatttgt attccagatc ttttattgag agcacgtcag cttattgaaa
2351 cgggcgatac tattagtgac ttgttatcta attcgaccgt ttcgttgagc
2401 tttctcttgc gtgagcgaat taagctagcg cttagggaat tgaaggagga
2451 tcacacgcaa ttgcaattag cagttgacgt gtctgtttct tctgaatgtc
2501 ctttcgtgct cttctttgca ggagactctg gtgttgggaa atccactgcg
2551 atgaaaaagt tcagggagga agtccttgat aaattgggat atcccaagac
2601 cgcacgtttc taccccagaa atcctgggga aaaattctgg tccggttatt
2651 tgcgtcatac ggcagtgata tatgatgatt tcgcgcaaat accgcagggt
2701 gacatgacat atgatgaagc tgaacttatc agaattgtca ccaatgctgt
2751 agtcacagtt cctatggcta tagctgaaga gaaggggcga actttcagat
2801 ccaagttcgt ttttgcctgc accaacaggt attgcgaaag cgaagatgcc
2851 ccgctcgccg acgaaatggc tttcagacga cgccgacatc tctatataca
2901 tgtcgcccgg aagccaggag tggaaccagg ccccagagga gtggacaatc
2951 tcgagttcag tgaaatggac aatcgggact ccaatggaga gcctgcctac
3001 caacttaatg atcagggtaa gcgagtattg ataaatcaaa agcttaccta
3051 tgatcagttg ctacagctgt atttcgagcg atatcaagcc tttaaagtgc
3101 ttgaaggaca attagaaggc agcgtagcac gagcaccgtc ctcgagcaat
3151 tatgagggat gtgataattg gtggactttg gtggggtccg aggccaaatt
3201 cgaggcggtg tacttcaatg gcgaacctgt tagcgaggac gatcaattga
3251 cccaacttgg gaattataag actcgctatg acatattgcg cgcgcgcgtg
3301 atactggagt ccatcgatta tgcggattgt gatttcatta ttaaaaattt
3351 ttccgcgatg ggtgaaggta tttaccatgc agatcccgag gtgaatgcaa
3401 ctgggcaacg acattttagc gcgatgagcc cagttacgcg tagattgatc
3451 tgctcgtgcc tgaagacacg tagggaggat gagattaaaa gccactctct
3501 tctgagtaaa ttcaaatccc tcctaactgt gcccgttgat gcctggaaag
3551 cagcgccagc ttggtttaag tgcatttcgc tcctcttagt tgctggtgga
3601 gtgggatatg ctctttgtag agcaataagc ggcatcatcg gtatcttccg
3651 taaaggccct gcagcagcat cactagctct attcagtggt ggaattggag
3701 cagtgctgcg gggagattcg cctgacgacc ctcgtgaaga acgagataat
3751 cctgacgtaa ttgttacaaa gggtcgtgga aaggctatat gggctggagc
3801 tgaaatacca gaagctttgg aagccctgag gaagagccag gttgttttga
3851 tgggaactgg ccgcaaaggt gagccagtca tgtgttcagc tcttcctata
3901 acatcacact ctgtcttatg taccacccat gagatagaag cttttgatcc
3951 caatcagaac atgagcttga ttgtcaataa ctctatttat agttttgttc
4001 tgattccggg agccataatg tacaagcgat atgatcaacc taacttggtt
4051 gacaaggtgc acgaacttgt acgcgttgat ttgcccaaaa ataagggctt
4101 ctctttaaac gctcgtgcgc aattcagcga ggacttttat gacaatggca
4151 ccgccatgaa atgttgggtg gtgcctaaca agaaccccgc tgttgctgac
4201 attatgcgca aggtggattg cgagaagagt tcgcagatca tagatatatt
4251 tgcaagcgag ctctctcgtt ctagtggctg tgaacccgtc aggcaaactc
4301 agcgttttat ctatgccgac ggaccagccc taaatgggca ctgtgggcgc
4351 ctattgtgtg ccaatctggc tgggcactgg cgcgtcatag gaatgtgtgc
4401 gggagaaggg aagaatagag ctggagtcac caaggctctg tatgctgaca
4451 tcccgcacga atttttaaga gcggataacc tcaatgctgt tcaaagaggt
4501 gctgagcttg atgcggctat tcttgatagg ttttcaatac ctatcagtga
4551 atgtcgtaaa gaactcacgc caatgacgac cagattaggt tatgttgtag
4601 gtcaatatcc gcgggctctg cgtaaaactt caatagttcc ttctatcatt
4651 cacgataatt tgtggaggaa accagagact gagcccacaa tattgggaaa
4701 gatagatgat cgctcgcctt tcccttatga tccctatgcc acaattggcg
4751 agaaatttgt gcaagaagtt ggcccgatag atttatccgt cggatcagat
4801 gctagtctcg ttgtggcaaa catagggtct tcttggaaag ctgttgggaa
4851 accacaatgt cccactgtcc ttacttggga agtggctatt aatggagatg
4901 cagctattcc atattgtgag cggctccccc tctcgacgtc cgaaggttac
4951 cctgactcta ttcagagaaa ttttggggaa aaaggaaaga aaagattttt
5001 tgatcttaag ggggagaatg tgcgagttcc tactcccgcg ctgatggaag
5051 aactagaagt tctcgagcgg gaactccaga aggaggaggt ttgtctcact
5101 tgcattaaca ctgcatgtgc taaggatgag aagacagccc cgaagaaggt
5151 tcgggttcaa ccgaaaaccc gaatttttga gatactcccg tttcaaatta
5201 atatcattat tcggagatat ctcatgttct ggatgcaact attgatggtt
5251 gcacacgatg agctgcccag taaagtcgga attaatgttt attctgagag
5301 ttgggataga ctgctgggta gacataccag attagccaac cactttaccg
5351 gtgactattc tggttttgat acttcaaccc cccgcgttct cgtctatgct
5401 ataatcgata aaataaatga attagctgac gacggggagg ttaaccaacg
5451 cacgagaaga aatatcatca gatttgtttt gaacaggtat cttatatctg
5501 atggtgttct ttatgagatt catggtggaa ccccctccgg cttcgctcca
5551 acagttatga taaattcggt tgtcaacgaa ttttatctta agtggagttg
5601 gatcgggtta ttgaaggaag ccgggtatgc taaccaagct accctctatg
5651 cttttcatga agccactgag atatcgcttt atggtgatga caacttcgtc
5701 tcagtggcca ctccagtggc ttccgtatac aatctcacga caatctctaa
5751 tttcctaggg aggattgggg ttaaattagg tgatggcgcc aaaacgggta
5801 ctataaaacc ttttatcccc cttgaagagg tggatttttt gaagaggcaa
5851 tttgttgcag actctggatc cactgcaatt ctttgtcctc tgaagaaaat
5901 ctctattgag gagagattgt tctatgtcag aggcgggcag gatgagattg
5951 ctgccctcga gcttaatata gctactgctc tatgtgaggc tttctttcat
6001 ggtaaggagt atttttcctt tctagagggg aaaattatag aagccatgcg
6051 caagagcggc gtagctctca gtagacctct gcccaccatg gaatctgtgc
6101 gagcgtggta tatgtcccag cgaggaaata caaagatccg ctcgccttct
6151 ttcgaaggcc tcggtactat gtcaggtatt ttaaatattg gattagccga
6201 ggctcgtagc gttggtggag ttgcttgctt ctccggaata gagtttcgag
6251 gtagaagtga tgatcacctt atggtgatcc cgacttacat tccgggaggc
6301 tggcgcacta agcaacagca gacgtatatt agttttgtgc gtgatagcga
6351 gaagatggct caagtaataa agcgcgtcgc ccacttctca actgttgttg
6401 ctactgataa gtctatggcg tatctggttg ctatttgcat tgcttacagc
6451 agaggatcaa tctccagaat ggaggttaga tgccacgttc agaatctcaa
6501 agtggcggag atgttgttat gcaaccagat atgtaatttc ctgtagagga
6551 aattttaggt gatgcccacc ggaccttaac gtggggttta tggcttctct
6601 ctgcggcctg atgcagagtt gtacatttat aactagtgtg tttatttttg
6651 tgtgtttgtt ttgtttgttt tgatataaaa taaactgaag tttgcaaaaa
6701 gggtttctcg gagttcttcc ctttccgact caggagcttg gcgtgttttt
6751 cttgatttct gtcgccggtt tcaatcagtg aaagtctgat ggcc