Sequence of DPV Japanese yam mosaic virus

Japanese yam mosaic virus gene for NIb/CP, partial cds.

ACC No: AB029404

Dated: 2003-07-07 | Length: 1041 | CRC: -1573478125

                !!NA_SEQUENCE 1.0
ID   AB029404   standard; RNA; VRL; 1041 BP.
XX
AC   AB029404;
XX
SV   AB029404.1
XX
DT   06-JUL-2000 (Rel. 64, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Japanese yam mosaic virus gene for NIb/CP, partial cds.
XX
KW   NIb/CP.
XX
OS   Japanese yam mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1041
RA   Fuji S., Mitobe I., Nakamae H., Natsuaki K.T.;
RT   ;
RL   Submitted (24-JUN-1999) to the EMBL/GenBank/DDBJ databases.
RL   Shin-ichi Fuji, Akita Prefectural University, Faculty of Bioresource
RL   Science; Shimoshinjo, Akita, Akita 010-0146, Japan
RL   (E-mail:sfuji@akita-pu.ac.jp, Tel:81-18-872-1640, Fax:81-18-872-1678)
XX
RN   [2]
RA   Fuji S., Mitobe I., Nakamae H., Natsuaki K.T.;
RT   "Nucleotide sequence of coat protein gene of Japanese yam mosaic virus and
RT   yam mild mosaic virus, isolated from Dioscorea alata in Japan";
RL   Unpublished.
XX
DR   GOA; Q9IR50.
DR   SPTREMBL; Q9IR50; Q9IR50.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1041
FT                   /db_xref="taxon:79917"
FT                   /mol_type="genomic RNA"
FT                   /organism="Japanese yam mosaic virus"
FT                   /strain="A"
FT   CDS             <1. .1036
FT                   /codon_start=2
FT                   /db_xref="GOA:Q9IR50"
FT                   /db_xref="SPTREMBL:Q9IR50"
FT                   /transl_table=1
FT                   /product="NIb/CP"
FT                   /protein_id="BAA97660.1"
FT                   /translation="AEIGKAPYIAESALRKLYLDKEVQQSEIEVYLRAIFEDYTEELED
FT                   LLVYHQSGNDVMDAGTSNPSKGKGQESASSKTNQKEAEQTVEGFEPAEDPTKSGKQHIT
FT                   TKNDRDVNVGTLGTFAVPRLKGLATKMHMPKVRGKAAMNLDHLLLYNPEQVDLSNTRAT
FT                   RKQFDTWYDGVKRDYELDDTSMQIILNGLMVWCIENGTSPNINGMWVMMDGEEQVEYPI
FT                   KPLIDHAKPTFRQIMAHFSNVAEAYVEKRNYEKAYMPRYGLQRNLTDMSLARYAFDFYE
FT                   ITSKTPARAREAHIQMKAAALRGAQNKLFGLDGNVSTMEENTERHTAEDVNQTMHSLLG
FT                   VRGV"
XX
SQ   Sequence 1041 BP; 367 A; 186 C; 259 G; 229 T; 0 other;

 AB029404  Length: 1041  July 15, 2003 09:01  Type: N  Check: 8509  ..

       1  agcggaaatt gggaaagcac catacattgc agagagcgcg cttagaaagt
      51  tatatctgga taaagaagtg caacagagtg agatcgaggt ctacctacgc
     101  gcaatatttg aggattacac agaggaatta gaagatctgt tagtttacca
     151  tcagagtggt aatgacgtaa tggatgcagg gacgagcaac cctagcaaag
     201  gcaaggggca agagagtgca agttcaaaaa caaatcagaa agaagccgaa
     251  cagactgtag agggttttga accagcagaa gatccaacaa aaagtggaaa
     301  acaacatata accacaaaga atgatagaga tgttaatgta ggcacattag
     351  gtacatttgc agtgccacga ttgaaaggac tggccacgaa aatgcacatg
     401  ccaaaagttc gtggcaaggc agctatgaac ttggaccact tgttgcttta
     451  taatcctgaa caagtcgacc tctcgaatac aagagcaaca aggaaacaat
     501  ttgacacctg gtatgatgga gtcaagagag actatgaatt ggatgacacg
     551  tctatgcaaa tcattttgaa tggtctcatg gtgtggtgca ttgagaatgg
     601  cacttcacca aatataaacg gaatgtgggt gatgatggat ggagaagagc
     651  aagttgagta tcctataaaa ccattaattg atcacgcgaa acccacgttt
     701  cgccagatta tggctcattt cagtaatgtc gctgaagcat atgttgaaaa
     751  gagaaattat gaaaaagcgt acatgccacg ctatggactt cagaggaacc
     801  tgacagacat gagtctcgct cggtatgcat ttgattttta tgaaataaca
     851  tcaaaaacac ctgctcgagc gcgtgaagct catatccaaa tgaaggcagc
     901  agcgcttaga ggagcgcaga acaaattatt tggattggat ggaaatgtca
     951  gcacaatgga agaaaacacg gagagacaca cagctgaaga tgtcaatcaa
    1001  actatgcaca gccttcttgg cgtgaggggt gtgtaagcta t