Sequence of DPV Japanese yam mosaic virus

Japanese yam mosaic virus gene for NIb/CP, partial cds, strain:O1B.

ACC No: AB029505

Dated: 2003-07-07 | Length: 905 | CRC: 1499037336

                !!NA_SEQUENCE 1.0
ID   AB029505   standard; RNA; VRL; 905 BP.
XX
AC   AB029505;
XX
SV   AB029505.1
XX
DT   06-JUL-2000 (Rel. 64, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Japanese yam mosaic virus gene for NIb/CP, partial cds, strain:O1B.
XX
KW   NIb/CP.
XX
OS   Japanese yam mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-905
RA   Fuji S., Nakamae H.;
RT   ;
RL   Submitted (02-JUL-1999) to the EMBL/GenBank/DDBJ databases.
RL   Shin-ichi Fuji, Akita Prefectural University, Faculty of Bioresource
RL   Science; Shimoshinjo, Akita, Akita 010-0146, Japan
RL   (E-mail:sfuji@akita-pu.ac.jp, Tel:81-18-872-1640, Fax:81-18-872-1678)
XX
RN   [2]
RA   Fuji S., Nakamae H.;
RT   "Genetic diversity of coat protein genomic regions of Japanese yam mosaic
RT   potyvirus isolates and co-infection with diffrent isolates";
RL   Unpublished.
XX
DR   GOA; Q9IR46.
DR   SPTREMBL; Q9IR46; Q9IR46.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .905
FT                   /db_xref="taxon:79917"
FT                   /mol_type="genomic RNA"
FT                   /organism="Japanese yam mosaic virus"
FT                   /strain="O1B"
FT   CDS             <1. .900
FT                   /codon_start=1
FT                   /db_xref="GOA:Q9IR46"
FT                   /db_xref="SPTREMBL:Q9IR46"
FT                   /transl_table=1
FT                   /product="NIb/CP"
FT                   /protein_id="BAA97667.1"
FT                   /translation="PEDLFVYHQSGGDTLDAGTSNPSKTKKQEDSGFDGSGRTSTEGFE
FT                   PADDPTGKGKQQTVVNLEKDVNVGTMGTFTVPRLKGLATKMNMPRVRGKAAMNLDHLLL
FT                   YNPEQVDLANTRATRKQFDTWYDGVKRDYELDDSSMQIILNGLMVWCIENGTSPNINGM
FT                   WVMMDGEEQIEYPIKPLIDHAKPTFRQIMAHFSNVAEAYIEKRNQERAYMPRYGLQRNL
FT                   TDMSLARYAFDFYEITSKTPARAREAHIQMKAAALRGVQNKLFGLDGNVSTTEENTERH
FT                   TAEDVNRNMHSLLGVRGV"
XX
SQ   Sequence 905 BP; 316 A; 162 C; 227 G; 200 T; 0 other;

  AB029505  Length: 905  July 15, 2003 09:01  Type: N  Check: 2284  ..

       1  ccggaggatt tgtttgtgta tcatcaaagt ggcggagaca cgctggatgc
      51  tggaacaagt aatccaagta agacaaagaa gcaggaagac tcaggctttg
     101  atggaagcgg aaggacatca acggaaggtt ttgaaccagc tgatgaccca
     151  actggcaagg gcaaacaaca aacagtagtc aatttggaaa aggatgtgaa
     201  tgttggtaca atgggcactt ttacagtacc gcgattgaaa ggacttgcaa
     251  caaagatgaa tatgcctagg gtcagaggaa aagcagccat gaacctagat
     301  cacttgttac tctacaatcc agaacaagtt gatttagcta atacgagagc
     351  tacaagaaag caatttgata catggtatga tggagtcaaa cgagattatg
     401  agctggatga tagctcaatg caaataatcc taaatggatt gatggtttgg
     451  tgtatcgaga atggcacctc accaaatata aatggaatgt gggtaatgat
     501  ggatggagag gaacaaattg aatatccgat aaaaccattg atagatcacg
     551  ccaaacccac atttcgacag ataatggctc atttcagtaa tgtcgctgaa
     601  gcatatattg aaaagagaaa tcaagagaga gcgtacatgc cacgctatgg
     651  acttcagagg aacctgacag acatgagtct tgctcgctac gcatttgatt
     701  tttatgaaat aacttcaaaa acaccagcga gagcacgcga ggctcacatc
     751  caaatgaagg cagcagccct caggggtgtg caaaataaat tgtttggatt
     801  ggatggaaat gtcagcacaa cggaagaaaa cacggagaga cacacagctg
     851  aagatgttaa ccgcaatatg cacagccttc ttggcgtgag gggtgtgtaa
     901  gctat