Sequence of DPV Rice gall dwarf virus

Rice gall dwarf virus genomic RNA, segment S11, complete sequence.

ACC No: AB030009

Dated: 2006-03-30 | Length: 1171 | CRC: -1416875377

                
ID   AB030009   standard; genomic RNA; VRL; 1171 BP.
XX
AC   AB030009;
XX
SV   AB030009.1
XX
DT   24-JAN-2000 (Rel. 62, Created)
DT   30-MAR-2006 (Rel. 87, Last updated, Version 5)
XX
DE   Rice gall dwarf virus genomic RNA, segment S11, complete sequence.
XX
KW   .
XX
OS   Rice gall dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Phytoreovirus.
XX
RN   [1]
RP   1-1171
RA   Omura T.;
RT   ;
RL   Submitted (13-JUL-1999) to the EMBL/GenBank/DDBJ databases.
RL   Toshihiro Omura, National Agricultural Research Center, Laboratory of
RL   Virology; Kannondai 3-1-1, Tsukuba, Ibaraki 305-8666, Japan
RL   (E-mail:toomura@affrc.go.jp, Tel:81-29-838-8932, Fax:81-29-838-8929)
XX
RN   [2]
RA   Moriyasu Y., Ishikawa K., Kikuchi A., Imanishi S., Tomita S., Akutsu K.,
RA   Omura T.;
RT   "Sequence analysis of Pns11, a nonstructural protein of rice gall dwarf
RT   virus, and its expression and detection in infected rice plants and vector
RT   insects";
RL   Virus Genes 20:237-241(2000).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1171
FT                   /organism="Rice gall dwarf virus"
FT                   /segment="S11"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:10986"
FT   CDS             30. .1100
FT                   /codon_start=1
FT                   /gene="pns11"
FT                   /db_xref="InterPro:IPR008777"
FT                   /db_xref="UniProtKB/TrEMBL:Q9JGV3"
FT                   /protein_id="BAA89796.1"
FT                   /translation="MDADTERVIKLHVDLIKNHQVYGVLTKFDAIRKLRLTADGNSNNA
FT                   SRAALSKLQELASSGEAYVVSDLASRTVETSDIVKAVIFTPHSVISRGKLIKDIIPYGV
FT                   MAAAIVYVPETITILDSIQFYGENHVSRPYSMVVLIDACKEIGTEVVGSDYDTYYYCQA
FT                   PEYGKNLLKMGTMRPNLPAIIRLSMGDLCYGAAISSHTMAAKYLPSYLTRLPNGFTPKS
FT                   HLLKIYLVLEMEQFKEIVQEMMAKGGHEYNDSKNLLSRTTMFNPDHAYTHIIFWRGWSS
FT                   TYKEFLSQDQLTTFTGRPGVAGDLGVWTFSIPSMFNDGRVYIRYKFFPLHAKKREHNSG
FT                   KGISLYPDLESLKLES"
XX
SQ   Sequence 1171 BP; 353 A; 200 C; 263 G; 355 T; 0 other;

ab030009 Length: 1171  30-MAR-2006  Type: N  Check: 5233  ..

       1  ggtatttttg atcatagtga atccctacca tggatgcgga cactgagcgt
      51  gtaatcaagc ttcatgttga tttgatcaaa aaccaccagg tatatggtgt
     101  gttgactaaa tttgatgcaa ttagaaaatt gcgtcttaca gctgacggaa
     151  attcaaacaa tgcatccaga gctgcattgt ctaaattgca ggaattggct
     201  tcatccggag aagcatatgt cgtatctgat ctcgctagcc ggactgttga
     251  aactagcgat atcgtcaagg ctgtgatatt tactcctcat tcagtaatat
     301  cacgcggtaa attgatcaag gacatcatac catacggagt gatggctgca
     351  gcgattgttt acgtaccaga gacaattacg atacttgata gtatccagtt
     401  ttacggtgag aaccatgtgt cacgtccata ctcgatggtg gtattgattg
     451  acgcatgtaa agaaattgga actgaagtag ttgggagtga ttatgatact
     501  tactattatt gtcaagctcc tgaatatggg aaaaatctgt taaagatggg
     551  aacgatgaga ccgaatcttc ctgcgataat aagattatca atgggtgatc
     601  tgtgttatgg tgcagccatt tcttcacata ctatggctgc caagtatttg
     651  ccaagttatt taacgcgttt gccaaatggt tttacgccta aatcacattt
     701  gctcaagatt tatttggtct tggaaatgga acaatttaaa gaaatcgttc
     751  aagagatgat ggctaaaggt ggccacgagt ataatgattc aaagaatttg
     801  ttgtcaagaa cgacaatgtt taatcccgat catgcttata cgcatatcat
     851  cttctggaga ggatggagtt ctacatataa ggaatttcta tcacaagatc
     901  agttaactac gttcactggt aggcctggag tagccggtga tctaggagta
     951  tggacatttt caattccatc gatgtttaat gatggtagag tatatattag
    1001  atacaagttc tttcctttgc atgcaaagaa aagagagcat aattccggga
    1051  aaggtatatc actttatccg gatttagaat cattgaagct tgaaagctag
    1101  ttgtcggttt acgcatgtgg ataggggctg tggccaacca cgcagttaat
    1151  cacctttggt caaaaaatga t