Sequence of DPV Turnip mosaic virus
Turnip mosaic virus CIP mRNA for cylindrical inclusion protein, partial cds.
ACC No: AB030276
Dated: 2000-10-05 | Length: 2193 | CRC: 641622136
!!NA_SEQUENCE 1.0
ID AB030276 standard; RNA; VRL; 2193 BP.
XX
AC AB030276;
XX
SV AB030276.1
XX
DT 04-OCT-2000 (Rel. 65, Created)
DT 05-OCT-2000 (Rel. 65, Last updated, Version 2)
XX
DE Turnip mosaic virus CIP mRNA for cylindrical inclusion protein, partial
DE cds.
XX
KW CIP; cylindrical inclusion protein.
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-2193
RA Ohshima K.;
RT ;
RL Submitted (26-JUL-1999) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Laboratory of Plant Virology, Faculty of
RL Agriculture; 1-Banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-29-8730, Fax:81-952-28-8709)
XX
RN [2]
RA Kundu A.K., Ohshima K., Sako N., Yaegashi H.;
RT "Cross-reactive and major virus-specific epitopes are located at the
RT N-terminal halves of the cylindrical inclusion proteins of turnip mosaic
RT and zucchini yellow mosaic potyviruses";
RL Arch. Virol. 145:1437-1447(2000).
XX
DR SPTREMBL; Q9E9R7; Q9E9R7.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2193
FT /db_xref="taxon:12230"
FT /sequenced_mol="cDNA to mRNA"
FT /organism="Turnip mosaic virus"
FT /isolate="59J"
FT /map="CI"
FT CDS <1. .>2193
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9E9R7"
FT /transl_table=1
FT /gene="CIP"
FT /product="cylindrical inclusion protein"
FT /protein_id="BAB16312.1"
FT /translation="EHIEPEEKAVVHQAKRQSEQELERVIAFIALVLMMFDAERSDCVT
FT KILNKLKGLVSTVEPTVYHQTLNDIEDDLSERNLFVDFELSSDGEILQQLPAEKTFASW
FT WNHQLSRGFTIPHYRTEGKFMTFTRATATEVAGKIAHESDRDILLMGAVGSGKSTGLPY
FT HLSRKGNVLLLEPTRPLAENVHKQLSQAPFHQNTTLRMRGLTSFGSAPISVMTSGFALN
FT YFANNRTKIEEFDFVIFDECHVHDANAMAMRCLLHECDYSGKVIKVSATPPGREVEFST
FT QYPVTISTEDTLSFQDFVNAQGSGSNCDVISKGDNILVYVASYNEVDTLSKLLVERDFK
FT VTKVDGRTMKVGNIEITTSGTPSRKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTD
FT NRMLSTTKTSINYGERIQRLGRVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTY
FT GLPVITNNVSTSILGNVTVKQARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLR
FT DSEIVLNKLAIPNRGVNAWLTASEYARLGANVEDRRDVRIPFMCRDIPEKLHLEMWDVI
FT VKFKGDAGFGRLSSASASKVAYTLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNC
FT VSSSNFSLQSITNAIKSRIMKDHTCENISVLEGAKSQLLEFRNLNADHSFTTKSDGISR
FT HFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITR"
XX
SQ Sequence 2193 BP; 684 A; 476 C; 518 G; 515 T; 0 other;
AB030276 Length: 2193 December 21, 2001 14:42 Type: N Check: 8921 ..
1 gagcatattg aacctgagga gaaggcagta gtgcaccaag cgaaaagaca
51 atctgagcag gagctcgaac gagtgatagc ttttatcgcc ttagttctca
101 tgatgtttga cgcagaacgc agtgattgcg tcacgaagat cctcaacaag
151 ctgaaggggt tagtgtcaac tgtggaacct acagtttacc accaaacact
201 taatgatatc gaagatgact tgagtgagag gaatctcttt gtcgactttg
251 aacttagtag tgatggtgaa attctccagc agctcccagc tgagaaaacg
301 tttgcttcgt ggtggaatca tcaattgagt agaggattca caatcccgca
351 ctacagaaca gaaggaaagt ttatgacctt caccagggca accgccacag
401 aagttgcggg taagatagca catgagagtg atagagatat actcctcatg
451 ggagcggtgg gatcaggcaa gtcaactggt ttaccatatc acctttccag
501 aaaggggaat gtattgcttc tcgaacccac tcgaccactc gcagaaaacg
551 tgcacaagca attgtcgcag gcaccatttc atcagaatac gactcttcga
601 atgcgtggat tgacatcgtt tggatcggca ccgatctcgg tgatgactag
651 tggtttcgca cttaactatt tcgcaaacaa tcgaacgaag attgaagagt
701 ttgactttgt catattcgat gaatgtcatg ttcacgacgc taatgcaatg
751 gcgatgagat gtttgctaca tgagtgcgac tactccggca aggtcataaa
801 ggtttccgcc acaccaccag gtcgcgaggt tgaattctcc actcaatatc
851 ctgtgacaat tagcacagaa gacacattgt catttcaaga ctttgtgaat
901 gcacagggta gtggaagtaa ctgcgacgtg atctcaaaag gagacaacat
951 cctcgtatac gtagcaagct acaacgaggt ggacacactt tcaaagcttc
1001 tagtcgagcg tgatttcaaa gttacgaaag ttgacggaag aacaatgaaa
1051 gtcggaaata ttgaaatcac cacgagcggg acacctagta ggaaacactt
1101 catagtcgca accaacatta ttgagaacgg ggtcaccctg gatattgatg
1151 ttgttgccga ctttggaaca aaagtactcc cgtatcttga cacggataat
1201 agaatgctta gtacaacgaa aacaagcatt aattatgggg agcgaatcca
1251 aaggctaggg agagttggaa gacacaagcc aggccacgct ctgagaattg
1301 gccacacgga gaaagggctg agtgaagttc caagctgcat tgcaacagaa
1351 gcagccctaa agtgttttac gtatggactt ccagttataa ccaacaacgt
1401 gtctacaagc attctaggca atgtaacggt gaaacaggca cgaacaatgt
1451 ctgtgtttga aataacaccg ttctacacaa gccaagtggt tagatatgat
1501 ggctcgatgc atcctcaggt ccatgcgctt ttgaagaggt tcaagctcag
1551 agattctgaa attgtcttga acaaattagc catacctaac cgaggagtaa
1601 atgcttggct cacagctagt gagtatgcac gacttggtgc aaacgttgag
1651 gacaggcgtg acgtacggat ccctttcatg tgtcgagaca tcccagagaa
1701 actccatcta gagatgtggg atgtgattgt caagttcaaa ggcgatgcag
1751 gtttcgggcg actttcaagc gccagcgcaa gcaaggtagc ttacaccttg
1801 caaacagacg tcaactccat ccagcgaaca gtcactatta tagatacact
1851 aatcgctgag gagagaagga agcaggagta cttcaaaaca gtaacctcta
1901 actgtgtctc ttcttcaaac ttctcactac agagcatcac aaatgccata
1951 aaatctcgta taatgaaaga tcacacgtgc gagaatatat cagtgcttga
2001 aggagcaaag tcacagttac tcgagttcag aaacttaaac gctgatcact
2051 cgttcactac taagtctgac gggatttctc gccattttat gagtgaatat
2101 ggagcactcg aggcagttca ccaccaaaac accaacgaca tgagcaagtt
2151 cttaaagctg aagggcaaat ggaacaaaac gcttatcacg cgt