Sequence of DPV Japanese soil-borne wheat mosaic virus
Soil-borne wheat mosaic virus genomic RNA 2 for capsid protein, 64-kDa readthrough protein, 19-kDa cys-rich protein, complete and partial cds.
ACC No: AB033690
Dated: 2003-07-07 | Length: 3574 | CRC: 14098653
!!NA_SEQUENCE 1.0
ID AB033690 standard; RNA; VRL; 3574 BP.
XX
AC AB033690;
XX
SV AB033690.1
XX
DT 21-APR-2000 (Rel. 63, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 4)
XX
DE Soil-borne wheat mosaic virus genomic RNA 2 for capsid protein, 64-kDa
DE readthrough protein, 19-kDa cys-rich protein, complete and partial cds.
XX
KW .
XX
OS Soil-borne wheat mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RP 1-3574
RA Shirako Y.;
RT ;
RL Submitted (19-OCT-1999) to the EMBL/GenBank/DDBJ databases.
RL Yukio Shirako, University of Tokyo, Asian Center for Bioresources and
RL Environmental Sciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan
RL (E-mail:shirako@ims.u-tokyo.ac.jp, Tel:81-3-5841-2677, Fax:81-3-5841-8036)
XX
RN [2]
RA Shirako Y., Suzuki N., French R.C.;
RT "Similarity and divergence among viruses in the genus Furovirus";
RL Virology 270:201-207(2000).
XX
DR GOA; Q9JGK0.
DR SPTREMBL; Q9JGJ8; Q9JGJ8.
DR SPTREMBL; Q9JGJ9; Q9JGJ9.
DR SPTREMBL; Q9JGK0; Q9JGK0.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3574
FT /db_xref="taxon:28375"
FT /mol_type="genomic RNA"
FT /organism="Soil-borne wheat mosaic virus"
FT /isolate="JT"
FT /strain="Japanese"
FT /segment="2"
FT CDS 330. .860
FT /codon_start=1
FT /db_xref="GOA:Q9JGK0"
FT /db_xref="SPTREMBL:Q9JGK0"
FT /transl_table=1
FT /gene="CP"
FT /product="capsid protein"
FT /protein_id="BAA94799.1"
FT /translation="MAVKNGYTGYNKELNLMASIHPFIRLSTLISQIEGWQATRASILT
FT HLGVVLNGVSKLGERNFFSRQKRFGTHTQDGDEIFCDLGGEAVMQTIARLTVALQSARG
FT EGSQTRNAKRGTAPTTNQVEGEEQGQTDQTLAISNALAEFMAFIHTKDFTMNECYTQSS
FT FEAKFNLKWEGTS"
FT CDS <861. .2591
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9JGJ9"
FT /transl_table=1
FT /gene="RT"
FT /product="64-kDa readthrough protein"
FT /protein_id="BAA94800.1"
FT /translation="RDGVSGKLRAQIVEDFQNRLVLADDLGVFPRRNLDGEVIRDEPEI
FT IYAELEDKLLSFESSVYHPKAVTVETEVAVLPKMQMDLELGVVADDVEMTVVTEVLIDE
FT ESSYFWLYLLLLLLSTFLSCFIVLSRSFIHFLGNRSGRGGPFCRKIATLLWGARLWLLR
FT RAARRYGSLGIVRKRYTRAGMRKYLRDYNFQLDEWESAVDCSPGEALIVADQRMFVRAV
FT NKVVDLEGDFDTVESVKRVFRIYNVRNYKVEKWLDKHTIRSALVVLNNVVKDDNLTLGE
FT GMLSLERASFDDVLGCDVEAQRNGMYFKDIIALQFAFRLVGTPEFSDFVIAYKGNLYPC
FT YVDAIRRHSLILEKHHVDEDQKKRNEKALEWLLMAGQGAFVLSAVVSTGFAAVKIHKWI
FT KSRMLLRALQMLPSVGGGGNDGGGGFSEEALQRFAVGRNFEERLAALHTGLDMAAENLE
FT SFSPEDMQVEIQHVIQAHVEGSYHAADLPFLGNVPSAASVVVDSVADSSSVGSDVCSAD
FT TSISLGVASGARRRAVASNTRMYPSAGVVSYGNFESPRVSGRSGIGSMKMKIASGPMAS
FT "
FT CDS 2658. .3182
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9JGJ8"
FT /transl_table=1
FT /product="19-kDa cys-rich protein"
FT /protein_id="BAA94801.1"
FT /translation="MSACAFHSCDKCVDGPKNVVCVSKYRHSVYKVLGLTVVKCRLPSD
FT CGVNCGMPAAFVLENGHPRLTLDGYCGEKHKGYVISGAWRHAQLRTLNEELDRLEKREE
FT FLKTQIKLLSDSAKANTAPVYVPKKINRMKAEVWDVNDKIQDRSAALADVMDAVALDLS
FT PDSSPRKSKPL"
XX
SQ Sequence 3574 BP; 913 A; 624 C; 982 G; 1055 T; 0 other;
AB033690 Length: 3574 July 15, 2003 09:22 Type: N Check: 5607 ..
1 gtattattat cacattacgt tgagtgttaa ctcttcttgt gaaattacct
51 ttcttaccag gataagaaat aaaatatttt ctgggttgtc actgtttgga
101 tacttagcgg agattgacat ctcgctatct taggcccgca tctttgcgat
151 aaatcctaag tagtcagctg ttaacgtgcg acgttgagag gcattggcat
201 ttcggctcgc tggataagtt aaccagactt aaaggtgagg tcgataggtc
251 actacagaag gcggcggata aggtaactgc ggagagcagt gatttgttgc
301 gaccaaaggt ggttgtacag ttaccttcaa tggctgtgaa aaatggttac
351 acgggttata acaaggagtt gaatttgatg gcttctattc atcctttcat
401 caggttgagt actttgataa gtcagattga agggtggcag gcaacacgag
451 cgagcatact tactcatttg ggtgtagtac tcaatggggt tagtaagttg
501 ggtgagcgaa attttttctc tagacaaaaa aggtttggaa cgcatactca
551 agacggtgat gagatattct gtgatcttgg tggtgaagca gttatgcaga
601 ctatcgccag actcacggta gcactccaat ccgcaagggg agagggttcg
651 cagaccagaa atgcaaagag agggacagca ccaactacta accaggttga
701 gggtgaagag caaggtcaga cagatcagac gttggccatt tcaaatgcgc
751 tggcagaatt tatggccttt atccacacta aagatttcac gatgaatgag
801 tgttatacgc agagctcttt tgaagctaag ttcaatctga agtgggaagg
851 tacaagttga cgggacggcg tctcgggaaa gttgagagcc cagattgtcg
901 aagacttcca gaataggctg gtgttggctg acgatttggg cgtttttccc
951 agacgcaatc ttgatggaga ggtgatacgt gatgagccgg aaattatata
1001 tgcggaactt gaggataaac tgttgagttt tgagagttct gtgtatcatc
1051 ctaaggctgt gacagtggaa actgaagtgg ctgttttacc gaaaatgcag
1101 atggatcttg aattaggtgt cgttgcagat gatgttgaaa tgactgtggt
1151 aactgaggtg ctcattgatg aggagagcag ttacttttgg ttatatctct
1201 tactccttct gctgtcgact ttcttatcgt gctttatcgt gttatctcga
1251 tcctttattc attttctggg gaacagaagt ggtcggggtg gtcctttctg
1301 ccggaaaatt gctacgttac tgtggggtgc gcggttgtgg ctgttgcgca
1351 gggcagctag gcgttacggc tctcttggaa tcgtcagaaa aaggtatacg
1401 cgcgctggta tgcgcaagta tttgcgtgat tacaattttc agcttgacga
1451 gtgggagagt gcggttgatt gctctccagg cgaagccttg attgttgcag
1501 atcaaagaat gttcgtcaga gcagtgaaca aggtcgtaga tctggaaggc
1551 gattttgata ctgttgaaag tgttaagaga gtttttcgga tctacaatgt
1601 gcgtaattac aaggttgaga aatggttaga caaacatacg atacgttcag
1651 ctcttgttgt gctgaataat gtcgtaaaag atgacaatct caccttaggt
1701 gaaggcatgc tgtcattgga aagagcgagc tttgatgacg tgttaggctg
1751 tgacgtcgag gctcagcgga atggcatgta cttcaaggat attattgctc
1801 ttcagtttgc ttttcgtctc gtgggcacac cggaattctc tgattttgtg
1851 atagcttaca aaggcaatct atacccatgc tatgttgatg cgatcaggag
1901 acatagtttg attttggaaa agcatcatgt tgatgaagat cagaaaaaga
1951 ggaacgaaaa ggcactggag tggctactca tggcaggaca gggcgctttt
2001 gtgttgtccg ctgttgtatc gacaggcttt gcggccgtga agattcataa
2051 gtggattaaa agtcgcatgc tcctgagagc gttgcagatg ctgccatctg
2101 taggtggcgg aggtaacgat ggtggtggtg gtttctcaga agaagctctt
2151 caaaggtttg cagtagggcg aaactttgag gagcgtctgg cggcgctgca
2201 cactggttta gatatggcag ctgagaacct agagagtttt tcaccggaag
2251 atatgcaagt tgagatccaa cacgttattc aagctcacgt cgagggttct
2301 taccatgctg cagatcttcc gtttttaggt aatgtgccta gtgcggcttc
2351 tgttgtagtg gattcagttg ctgattccag tagtgtcggc agtgatgtgt
2401 gtagtgcaga cacgtctatt tcgttaggcg tggctagtgg tgcaaggcgt
2451 cgtgctgttg ctagtaacac taggatgtat ccaagtgctg gtgttgtgag
2501 ttacggtaac tttgagtcac cgcgagttag tggtagaagt ggaattggta
2551 gtatgaagat gaaaatcgct agtgggccta tggcgtccta gcgtactgtt
2601 tttcattcta ctcactttca tttctattac gtcttcgcgt tttgatttta
2651 aagtaatatg tcggcctgtg cgtttcattc ctgtgacaag tgtgttgatg
2701 ggcccaaaaa tgttgtgtgc gtcagtaagt atcgtcacag tgtttataaa
2751 gttttgggtc tcactgttgt aaagtgtcgt ttgccttctg actgcggtgt
2801 caattgcggc atgcctgcgg cgtttgttct cgagaacgga catcctaggt
2851 tgactctcga tggatactgc ggtgagaagc acaaaggtta tgtgatttct
2901 ggtgcatggc gccatgcgca actccggact ttgaacgaag aacttgacag
2951 gttggaaaag agggaggagt ttttaaaaac tcagataaag ttgctcagtg
3001 atagtgctaa ggccaacact gctcctgttt acgttcctaa gaagattaat
3051 cgtatgaagg cggaggtctg ggatgttaat gataaaattc aggatcgtag
3101 cgctgctctt gcagatgtta tggatgctgt tgcgctggat ttatcgcctg
3151 acagttcacc aaggaagtct aaacctctgt gatgtatgtt ctgttgaaat
3201 actgtatgtg tgtatactgg agtaggtaac caggataaag aaccctagcg
3251 aaaatgtttt gaaaaaatat tctgtatgta tataaataaa tgggcaagtc
3301 tgttgctttg gctatagagt aatcatactc ttaaaacaat gacgtggtct
3351 tcacgataga agatggtgct tgttatttca cctaaatcga aataacgaaa
3401 gggcgttcca cagtacgttt aaactgtggg tttcaacctc tagttgctat
3451 tgatgtaata taaaaaagat caatattcga ctatgatgag gtgcgactgg
3501 gtgtcgcggc tgctattaca cagcagttag aaggggttca attccccccc
3551 cgaaccggag ggttatccgg ccca