Sequence of DPV Sorghum chlorotic spot virus
Sorghum chlorotic spot virus genomic RNA 1 for 145-kDa protein, 59-kDa readthrough protein, 37-kDa movement protein, complete and partial cds.
ACC No: AB033691
Dated: 2003-07-07 | Length: 6878 | CRC: -1756150271
!!NA_SEQUENCE 1.0
ID AB033691 standard; RNA; VRL; 6878 BP.
XX
AC AB033691;
XX
SV AB033691.1
XX
DT 21-APR-2000 (Rel. 63, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 4)
XX
DE Sorghum chlorotic spot virus genomic RNA 1 for 145-kDa protein, 59-kDa
DE readthrough protein, 37-kDa movement protein, complete and partial cds.
XX
KW .
XX
OS Sorghum chlorotic spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RP 1-6878
RA Shirako Y.;
RT ;
RL Submitted (19-OCT-1999) to the EMBL/GenBank/DDBJ databases.
RL Yukio Shirako, University of Tokyo, Asian Center for Bioresources and
RL Environmental Sciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan
RL (E-mail:shirako@ims.u-tokyo.ac.jp, Tel:81-3-5841-2677, Fax:81-3-5841-8036)
XX
RN [2]
RA Shirako Y., Suzuki N., French R.C.;
RT "Similarity and divergence among viruses in the genus Furovirus";
RL Virology 270:201-207(2000).
XX
DR GOA; Q9JGJ5.
DR GOA; Q9JGJ6.
DR GOA; Q9JGJ7.
DR SPTREMBL; Q9JGJ5; Q9JGJ5.
DR SPTREMBL; Q9JGJ6; Q9JGJ6.
DR SPTREMBL; Q9JGJ7; Q9JGJ7.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6878
FT /db_xref="taxon:107804"
FT /mol_type="genomic RNA"
FT /organism="Sorghum chlorotic spot virus"
FT /segment="1"
FT CDS 115. .3948
FT /codon_start=1
FT /db_xref="GOA:Q9JGJ7"
FT /db_xref="SPTREMBL:Q9JGJ7"
FT /transl_table=1
FT /gene="ORF1"
FT /product="145-kDa protein"
FT /protein_id="BAA94802.1"
FT /translation="MEGTGGLLGILGEADIVRAAIATRTNSQLHQTVCDHIKDHIVDSK
FT EKQKTKKKIDVRRNLDQEQIQLLNELYPERHIVTSSYERGTHNFAAASRIIELDILLSK
FT FPKDKFVYDIGGNWASHVKRNDNRRVHCCCPILDFRDAQRKSVRWASIEKFVAEKESIP
FT EDLGNKIKQLYSDESRIRENVRKQDLRAEAMDGVWYCQNKFEDCVHNVANAAAIAIHSI
FT YDIEIEDLVDALEEKQIKQLTGTFLFSVELLMGSKRGELPTVNGFFEVEGDKVKYGFYD
FT DPNCGYTHNLQQLKKYLTKTYVKARGGSVYYLELNDIRGDVVFFTFTDATEAVMMGVSV
FT DESFKCIPVNAANKVVFPLFSLNERSKELEFSEVILPRDFVSRAVEYVDRVKDNQNTVD
FT NIRSYLFSTNNSVVIAGASRKTVEKVNPLLISRICTTLQVYSEVRREKEKRVMIALKDQ
FT VREDVSLNSLFAATVARVFGKVSVWQRALRAYATWIGHVYGCDVLNFANMPLYVEIHDR
FT IRLWSQTAQLDGFFHDMADLEEKMRVHREIEEERKRISECIASEKLGDLYVEVDVCDNV
FT SERNVEARVLRPMEHKKGAINLSIVNSWCEEGSLFALDERPRKVHTPLKNLLGKMVEII
FT FPKCELSAVMFDEQGQRVYADSLDKRQLKLLLDGKISPKDVTVGVQQSIQSEMVAQHDF
FT TLDKVVREVAAEAFDIWGRELEGVSEEKEEVAVVSKSCRSVAVQTNDDDDLPPPTATSP
FT SPSISSIEDNYPQTPDFTTPSSPDSVVTESSSDGEEPAVKQWGSTCSESDDAYLSVSVM
FT MTDEVKVSRLPNAPKFESFATVQKKAKMEYLWYLRCKMISDRSTLRGIIDDFNNGLFYS
FT ENCDTPKDSCFLDYTTSSNGTWCFSKRPQRLGHAYGVGFNIVAGKITTCELFKLFWDQE
FT VLSDKPRNCGMYNYVLINDLTYLMNEMVIYRNLQNTFMRKERRVSAKVVLKDGVPGCGK
FT STWILNNANLKRDVVLSMGKEATVDLREKFEEKYAFGKKELNRVRTVDSYLMHDCGKEM
FT TCNTLHFDEALMAHAGMVYFCADLLGARKLICQGDSQQIPFVNRVESITLRYANLVIDK
FT TDKIRHTYRSPIDVACYLTMKGYYGADRITTTNSDGRSLGVVGPRHEKPMTSVYCVPYL
FT AGVQYLTFTQAEKEDLHKALRSKGPVSVSTVHEAQGKTFNDVILVRLKTTENEIYPGGR
FT KSKPYSIVGVTRHRRSLVYYTAIEDRLYYDIEDMKRVMEDKLMKSFNGEHTK"
FT CDS <3949. .5472
FT /codon_start=1
FT /db_xref="GOA:Q9JGJ6"
FT /db_xref="SPTREMBL:Q9JGJ6"
FT /transl_table=1
FT /gene="RT"
FT /product="59-kDa readthrough protein"
FT /protein_id="BAA94803.1"
FT /translation="RFGSKFDSVDVCDREVKVPDVGELQTIQDFYDRTFPGNSTIETFF
FT DGYEVATGGIQIEVDNCKIFPHKNVKVWQEKRGLIPALRTAMPEKRQNGLVESLLALKK
FT RNMAAPKLQEAVNEFEIIGETIEKAKAVFFNETLIDNTECSTLEANMRWWEKQSHTARQ
FT QMLADTRFVDQIDLCTYNFMIKNDVKPKMDLTPQSEYAALQTVVYPDKIVNALFGPVMK
FT EINERIRYALKPHVVYNSRMNADELDRTVEFLDVNKKYNAFEIDFSKFDKSKTSLHIRA
FT VIELYKLFGLEELLAFMWEKSQCQTVVKDRLNGIVAYLLYQQKSGNCDTYGSNTWSAAL
FT ALLETMPLEKAEFMIFGGDDSLILFPEEVVVEDPCRRLASLWNFDCKLFSFNHNLFCGK
FT FLLKIGDRYRFSPDPVKLMTKLGRKDIVDGQVLSEIFVSIGDNYKSYRDFRILSALAAA
FT VQERYRTNEDALAALISLRKYISDFSLFSSMFGYKGGFVESKVSKDYEW"
FT CDS 5527. .6510
FT /codon_start=1
FT /db_xref="GOA:Q9JGJ5"
FT /db_xref="SPTREMBL:Q9JGJ5"
FT /transl_table=1
FT /product="37-kDa movement protein"
FT /protein_id="BAA94804.1"
FT /translation="MANPTSLKSNKLGDVSADSLEAMINGMMEDLENKEFDEEDLRTNR
FT SRAYNVESKFMRKPLVSDKVWKRLKDRYQQWSKSNKEMGTAFNVTFENIMLNVVPNVPE
FT GYSGTTKISLADTGLTLSQQVIPDQEQTMELGAGPHVMYFNMHYSIPLNDDRPIVLQFE
FT TDCEMANSSMSVMTVFAYWKVSFNFRSTYYKPQRSTCTKLLVGYKKDTRMKDAKDVRAF
FT VARSLVIERMLNDRPYVLPDSVNVVKEAFKKKEADGTTSAIPEKGEFVDPMLKLNSVAR
FT RKARESAGNMTLKDREKAAKEGMRTEEADQKVKPKADIQFGSVQQL"
XX
SQ Sequence 6878 BP; 1951 A; 1197 C; 1829 G; 1901 T; 0 other;
AB033691 Length: 6878 July 15, 2003 09:15 Type: N Check: 3582 ..
1 ctgttcggtc cgtcaggtac tcaaaacagt tgttaggaat aattacgtta
51 ctgtaagatc tttgccaagg gccgcctctg gcgataaatc cttgggggtt
101 ttatagtttt cgtaatggag ggaactggtg gtttgttggg tatcctaggt
151 gaggctgata tagttcgagc cgcaatagca accagaacga attcgcagtt
201 gcatcagact gtatgtgacc atattaaaga tcatatagta gatagtaaag
251 aaaaacaaaa aacaaaaaaa aaaatagatg tgcgcaggaa tttagatcag
301 gagcagatac aactcttaaa tgaactgtac cctgagaggc acattgtcac
351 cagcagttac gaaaggggga cgcataattt tgccgccgct tctaggatca
401 ttgagttgga cattttgctg agcaagtttc caaaagacaa gtttgtctat
451 gatattggtg gtaattgggc ttctcatgtg aaacggaatg ataacagaag
501 ggtgcattgt tgttgtccga ttttagattt tcgtgatgca cagagaaaat
551 ctgtacgttg ggcgtcgatt gagaaattcg tggctgaaaa agaaagtatt
601 cctgaagatc tgggtaataa gattaagcaa ttatactctg acgagagtcg
651 gatcagggag aacgtgagga aacaggattt acgggctgag gctatggatg
701 gtgtgtggta ttgtcaaaac aagttcgaag attgtgtaca taacgtggcg
751 aatgcggcgg ctattgctat ccacagcata tacgatatcg aaatagagga
801 cttagtcgat gctttggaag agaaacagat aaagcagctg actgggactt
851 tccttttttc tgtggagttg ttgatgggta gtaaacgcgg tgagctacca
901 accgttaacg ggttttttga ggttgagggt gacaaagtga aatacgggtt
951 ttacgatgac cccaactgtg gttatacaca caacctgcaa cagttgaaaa
1001 aatatctcac aaagacatat gttaaggcac gaggtggttc tgtatattac
1051 ctggaattga acgacattag aggtgacgtt gtgttcttta cgttcactga
1101 tgctacagag gctgttatga tgggcgtgag tgttgacgaa tcattcaaat
1151 gtatcccggt gaacgcagca aataaagtgg tattcccgct attttccttg
1201 aacgagagga gtaaggaatt ggaattttct gaggttattt taccgcgcga
1251 tttcgtgagc agagcggttg aatatgtcga cagagttaag gataatcaga
1301 atacggttga taatatcagg agctacttgt tttctaccaa taatagtgtt
1351 gtgatagcgg gtgcttcgag gaagacagtt gagaaagtca atccgttgtt
1401 gatctcgcgt atttgtacta cattgcaagt gtattccgag gtgcgaagag
1451 agaaagaaaa acgcgttatg attgctttga aagatcaggt gagggaagac
1501 gtttctctga actcgctgtt tgctgctact gtagcgcgtg tttttggcaa
1551 ggtatcagtt tggcagcgtg cgctgagggc ctacgcgaca tggatcgggc
1601 acgtgtacgg ttgtgatgta ttgaatttcg cgaacatgcc gttatacgta
1651 gagattcatg atcgtattag gttatggtca cagactgcgc agttggatgg
1701 gtttttccat gatatggctg atttggagga gaaaatgcgc gttcatcgtg
1751 aaattgagga agagagaaag cgtattagcg agtgcattgc ttctgagaaa
1801 cttggggacc tatacgttga agttgatgtg tgcgataatg tttcggagag
1851 gaatgttgag gctagagtac taagaccgat ggaacacaaa aaaggggcta
1901 tcaatttgag tatcgtcaat tcgtggtgcg aagagggaag tttatttgct
1951 ttggatgaga gaccgcggaa agtgcacacc ccgttgaaaa acttgttggg
2001 aaaaatggtt gagatcatat tcccgaaatg tgagttgtca gcggtaatgt
2051 ttgatgagca gggacagcgt gtgtatgcgg actctttaga taaaaggcaa
2101 ttaaaacttc ttttggacgg taagatttca cctaaagatg tgactgtcgg
2151 cgtacagcag agcattcaat cagaaatggt tgcgcagcat gattttacgc
2201 ttgataaggt tgtcagggaa gttgcagctg aagcattcga tatttggggt
2251 cgtgagttgg aaggagtttc ggaggagaaa gaggaagttg ctgttgttag
2301 caagagttgc cgaagtgttg ctgtgcagac aaatgacgac gacgacctcc
2351 cgccaccgac tgctacatct ccatcaccct ccatcagttc tatagaggac
2401 aactatccgc aaacgccgga ctttactaca ccgtcctcgc ctgattcggt
2451 tgttacggaa agctcttctg acggagagga accggccgtt aagcagtggg
2501 gctcgacgtg ttccgagagc gacgatgctt atctatctgt atctgtgatg
2551 atgacggatg aggtgaaagt atcgagattg cctaatgcac caaaatttga
2601 atccttcgcg acagtgcaga agaaggcgaa gatggagtat ttgtggtact
2651 tgcgttgtaa gatgatctct gataggtcaa ccttgcgagg tatcatagat
2701 gatttcaata atgggttgtt ctactcggaa aactgtgata cgccgaaaga
2751 ttcatgtttc ttggactata cgacttcgag taacggcacg tggtgttttt
2801 cgaaacggcc tcagcgcctt ggacacgctt acggtgttgg gttcaacatt
2851 gtggctggaa agatcacgac ttgcgaatta ttcaagttat tttgggatca
2901 ggaagtgctc agcgataaac cgaggaattg tggtatgtat aattacgttc
2951 ttataaacga cttgacttac ctgatgaatg aaatggttat ttacaggaat
3001 ttgcagaaca cgttcatgcg gaaggaacgt cgggtgagtg cgaaagtcgt
3051 gcttaaggac ggtgtacctg gttgcggaaa gtccacgtgg atattgaaca
3101 acgctaattt gaaaagagat gttgttttgt cgatgggaaa ggaggccacc
3151 gtggacttgc gagaaaaatt tgaagagaaa tatgctttcg ggaaaaagga
3201 gttgaatcgt gtgcgtaccg tagattcgta tctcatgcac gattgtggca
3251 aagagatgac ctgcaacaca ctgcactttg atgaagctct gatggcgcat
3301 gctggcatgg tgtatttttg tgccgatctt ctgggcgcgc ggaagctcat
3351 ttgccagggt gattcccaac aaatcccgtt tgtgaatcga gtcgaatcaa
3401 taacgttacg ctatgcgaat ttggtgatag ataagacgga taaaatcaga
3451 cacacttacc gatctcctat agacgttgcg tgctacttga cgatgaaagg
3501 atactatggg gctgaccgga ttacgacgac caattccgac ggtagatctt
3551 tgggagtggt tggacccagg cacgagaagc cgatgacgtc tgtgtactgc
3601 gtgccttatc tagctggtgt gcagtatcta actttcacgc aggctgagaa
3651 ggaggatttg cataaagcac tacgctcaaa aggacctgtt tctgttagca
3701 cggtgcatga agctcagggc aagacgttca acgacgtcat tctggtacga
3751 ctgaagacca ccgaaaacga aatttatcca ggcggaagaa agtccaaacc
3801 ttactcgata gtgggtgtga ctaggcacag gcgatcattg gtctactaca
3851 cggctattga agacaggttg tattacgaca ttgaagatat gaagcgcgtt
3901 atggaggaca agctgatgaa atcgtttaac ggtgagcata ccaaatgacg
3951 gtttgggtcg aagtttgact ctgtagatgt gtgtgatagg gaagttaaag
4001 tgccagacgt aggagaattg caaacaattc aagacttcta tgaccgcact
4051 tttcccggca actccactat agagacattc ttcgacgggt acgaagtcgc
4101 aactggtggt attcagattg aagttgataa ttgcaagatt ttccctcata
4151 agaacgttaa agtctggcaa gagaaacgag gtttgatacc ggctttgagg
4201 actgccatgc ccgagaagag acagaatggt ttggttgagt cgttattagc
4251 attgaagaag agaaatatgg cggcaccgaa attgcaagaa gctgttaacg
4301 aatttgagat tataggtgag actattgaga aagcaaaagc ggtcttcttt
4351 aacgaaaccc tcatcgataa cactgagtgt tccactttgg aagcgaacat
4401 gcgctggtgg gaaaaacaat ctcatacggc tcgccagcag atgttagcgg
4451 atacgcggtt tgtagatcaa attgatcttt gcacgtacaa ttttatgata
4501 aaaaacgatg tcaaacctaa aatggatttg acacctcaat cagagtacgc
4551 tgccctgcag accgttgttt atccggacaa aatagtgaac gctttgttcg
4601 gtcctgttat gaaggagatc aatgagcgca tccggtacgc cttaaaacca
4651 catgttgtgt acaattcgcg catgaacgca gatgaattag acaggacggt
4701 tgagttctta gatgtgaata agaagtataa cgcatttgag attgatttct
4751 cgaaattcga caagtcaaaa acgtcacttc atattcgagc tgtgatagag
4801 ttgtacaagc tttttggtct cgaagagttg ttggcgttca tgtgggaaaa
4851 atcgcagtgt cagactgttg tgaaagatag gcttaatgga attgtggcct
4901 acttgttgta tcaacaaaaa tctggaaact gtgatacata cggatctaac
4951 acgtggtctg cggctcttgc gttattagag accatgccgc ttgagaaggc
5001 ggagttcatg atcttcggtg gtgatgactc tttgatactt tttcccgagg
5051 aggtggttgt tgaagaccct tgcagacgct tggcttcgtt gtggaacttt
5101 gactgtaagt tgttttcttt caaccataat ttgttttgtg gaaagttttt
5151 gttgaaaatc ggcgatcgat ataggttttc ccccgaccct gtaaagttaa
5201 tgacaaaact ggggaggaaa gatatagtag atggtcaggt tttatcggag
5251 atttttgttt ctattggaga taactacaaa tcttatagag attttaggat
5301 tttgagtgca ttagctgcag cagtgcaaga acgatataga actaatgaag
5351 atgcgttagc tgctttgatt agtttgcgga agtacatatc ggattttagt
5401 ttgttttcta gtatgtttgg gtataaaggg ggttttgttg agagtaaggt
5451 aagtaaggat tatgagtggt gagagttaag actaggtcgt ggctcttttt
5501 gtttttctta tttactggtt ttcaacatgg ccaacccaac ttcccttaaa
5551 agtaacaaac ttggtgatgt ctctgccgat tcgcttgagg cgatgattaa
5601 cggtatgatg gaagatttgg agaacaaaga gttcgacgaa gaagacttaa
5651 ggacaaacag gtctagagct tacaacgtgg aatcgaaatt tatgcggaag
5701 ccgctggttt ctgacaaagt gtggaagcga ctgaaggatc gttaccagca
5751 gtggtcaaaa tctaacaagg agatggggac ggcgtttaat gtcactttcg
5801 aaaacattat gctgaatgtg gttcccaatg ttcctgaagg ttactctggt
5851 actacgaaaa tttccttggc cgatacgggc ttaactttat cgcaacaagt
5901 cattccagat caagaacaga cgatggaatt gggtgctggt ccgcacgtta
5951 tgtatttcaa tatgcactac agcataccac tgaacgacga ccgccctatt
6001 gtcttacaat ttgagacaga ctgtgaaatg gctaactctt cgatgagtgt
6051 gatgacagtt tttgcctatt ggaaagtgtc ctttaacttt agatctactt
6101 attacaaacc acagaggtcc acatgcacga aattgctggt cggttacaag
6151 aaggacacgc gaatgaagga tgcgaaagat gttcgtgctt ttgtagctcg
6201 ttcactggtc atcgaacgca tgcttaatga ccgcccttac gtactgcctg
6251 atagcgttaa tgtggtgaaa gaggccttta agaagaagga agctgatggg
6301 acgacgagtg ctattcctga gaaaggtgaa tttgttgatc ctatgttgaa
6351 actgaactcg gttgcgcgta gaaaagcaag agagtctgcg ggcaacatga
6401 cgttgaagga tagagaaaag gctgctaaag agggtatgag aactgaagaa
6451 gcagatcaga aagttaaacc gaaggcagac atacaatttg gaagtgtaca
6501 gcagttataa atgtactact atacgtgtgt gtgttgtatt tccttatgta
6551 gttatttctt cataagaaaa ttaacctact tgcttggacg gaaagcaagc
6601 gaacctgttt cgatatgcag gagtctgcgt ctctaagact gtaaaattta
6651 gagagaccta cacattcggg ttgtgattgt gcgtggttcc gacgatacgg
6701 aactgtccac cgtgaaggac ataaaatgtc acgggtctta tccctaggcg
6751 ctacagatgt aattgacgaa agatctgtat ttgtctatga tgggatgtgg
6801 tgggttgcca cagctgctat gacacagcag ttaagagggg ttcgactccc
6851 cccctgaacc ggagggttat ccggccca