Sequence of DPV Sorghum chlorotic spot virus
Sorghum chlorotic spot virus genomic RNA 2 for capsid protein, 62-kDa readthrough protein, 18-kDa cys-rich protein, complete and partial cds.
ACC No: AB033692
Dated: 2003-07-07 | Length: 3418 | CRC: -1103789034
!!NA_SEQUENCE 1.0
ID AB033692 standard; RNA; VRL; 3418 BP.
XX
AC AB033692;
XX
SV AB033692.1
XX
DT 21-APR-2000 (Rel. 63, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 4)
XX
DE Sorghum chlorotic spot virus genomic RNA 2 for capsid protein, 62-kDa
DE readthrough protein, 18-kDa cys-rich protein, complete and partial cds.
XX
KW .
XX
OS Sorghum chlorotic spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RP 1-3418
RA Shirako Y.;
RT ;
RL Submitted (19-OCT-1999) to the EMBL/GenBank/DDBJ databases.
RL Yukio Shirako, University of Tokyo, Asian Center for Bioresources and
RL Environmental Sciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan
RL (E-mail:shirako@ims.u-tokyo.ac.jp, Tel:81-3-5841-2677, Fax:81-3-5841-8036)
XX
RN [2]
RA Shirako Y., Suzuki N., French R.C.;
RT "Similarity and divergence among viruses in the genus Furovirus";
RL Virology 270:201-207(2000).
XX
DR GOA; Q9JGJ4.
DR SPTREMBL; Q9JGJ2; Q9JGJ2.
DR SPTREMBL; Q9JGJ3; Q9JGJ3.
DR SPTREMBL; Q9JGJ4; Q9JGJ4.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3418
FT /db_xref="taxon:107804"
FT /mol_type="genomic RNA"
FT /organism="Sorghum chlorotic spot virus"
FT /segment="2"
FT CDS 191. .718
FT /codon_start=1
FT /db_xref="GOA:Q9JGJ4"
FT /db_xref="SPTREMBL:Q9JGJ4"
FT /transl_table=1
FT /gene="CP"
FT /product="capsid protein"
FT /protein_id="BAA94805.1"
FT /translation="MAVEAGYDTWNAEINRIAVRHAFIRYNTLLATVQDWTKTRTSLVA
FT HVGTVLAALSTLGTRDFFSRKKRFAFAEADGDIIFCDLSDEGTQQAMNRLKTVLMAVKG
FT EGLKARNAGRASGTGTQAQETEDTSGNDTALAIANALVEFQTHIDSDLFLKNHCFTQDQ
FT FEARYNLKWSGK"
FT CDS <719. .2368
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9JGJ3"
FT /transl_table=1
FT /gene="RT"
FT /product="62-kDa readthrough protein"
FT /protein_id="BAA94806.1"
FT /translation="WGGVLSASRESVVENAVLRRLTAKDLGLLPRRDTNGTVLQDGPDI
FT LYEELEDALLASNTSVYNPHAAIEEYEIDTGDGEQLRHEVSHTEDSDYRILYLFLILCA
FT ILMTLAMMLSRAFVNFLYNRRDHRRFGGPCERCARRLWRFRLWLVGLAMRRYGDLQVTR
FT KRHTRSAMRQYLNSYEDQTDLWQSYEGVTPEEALIVADQHLFVDAVDQLASGGGDLQCV
FT RTAQTISERYGVKNPALQDKLDEFARRLAIQVRFEDTDATPGFLDLRNASMQEVLDCDL
FT SEQTINPQYNQICALQHMFAMVGKPAFTDFVIAYKGTYYPCVIEAQRKHAEMLGTDPDD
FT KWGPLEWMYCVIMVGSLASFGFATVKGIVKLSQMVKNWLRLRALRALPSVTHGGDGGDG
FT GLPFFEMEDFTARLRVLNEFVANMGEQVVDTSVEDLRRDLVSVLTAHSGSEPPAVDRPY
FT LEGVGIGREVDELPASTEIEGEQGESLFDPGLRIKRWETEAAVPKGVGGFSSFIRTSGS
FT VSGRARMSAQNSVSRVKLRNASMMKSKRLMAA"
FT CDS 2409. .2879
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9JGJ2"
FT /transl_table=1
FT /product="18-kDa cys-rich protein"
FT /protein_id="BAA94807.1"
FT /translation="MTVSTIHSCERCLEGRTSLRCENKYRLSVYQSRQVEKSAYACKIS
FT QFGVPCGMPAQFELDGETLKVVCDGYCGLKHKNMAESGSWRGTLLVILQKELEALQLKE
FT EQLKTRIAEVTQQHDLVMAETAAVLRPDSPPKAMVTTNSRVKYVRRKPAPRM"
XX
SQ Sequence 3418 BP; 874 A; 620 C; 969 G; 955 T; 0 other;
AB033692 Length: 3418 July 15, 2003 10:08 Type: N Check: 172 ..
1 taaaacctca cctacattga tctcgactac cattagaagg gccgcttcgg
51 cgataaatcc ttttatggca gttgttgatt aatagaagtg cgagaagaaa
101 ctggagaaat tgaagggaca gattgagtct aagcagcgcg gtacgatttc
151 ggaagttcaa ccacaaaaat ctgttacggt ctccattcag atggcggtcg
201 aagccggtta tgatacgtgg aatgctgaaa tcaaccgtat agcagttcgc
251 catgcgttta taagatataa tactctattg gcgacggtgc aagactggac
301 aaagacgcgt acctccctgg tggcgcatgt tggcacggta ttggccgcgc
351 taagtacgtt gggaactagg gactttttct ctaggaagaa gcgttttgcc
401 ttcgcggaag ctgatgggga tatcattttc tgtgatctta gcgatgaagg
451 tactcaacag gccatgaatc gcctgaagac ggtactaatg gctgtgaagg
501 gagaagggtt gaaagcgagg aacgctggtc gtgctagtgg taccggcacg
551 caggcgcagg aaactgaaga cacgagcggg aacgataccg ctttagctat
601 tgctaacgcc cttgtggagt ttcaaactca tatagacagt gatttgtttt
651 taaaaaatca ctgctttacg caggatcagt ttgaagctcg ttacaatttg
701 aaatggagtg gcaaatgatg gggtggcgtc ttgtcggcga gccgcgagtc
751 tgtagtggaa aatgctgttc tgcggcgatt aaccgctaaa gatttggggt
801 tgctgccaag gcgcgataca aacggtactg tactgcaaga tgggcctgac
851 attttgtatg aggagttgga ggatgctttg ttagcgtcta acacctctgt
901 gtacaatcca catgcagcca ttgaggagta tgagattgac actggagacg
951 gtgagcaatt acggcatgaa gtttctcata ctgaagattc ggattacaga
1001 attttgtatt tgtttcttat actttgtgcg atattgatga ctttagctat
1051 gatgttgtct cgagcttttg tgaacttctt gtataatagg agagaccaca
1101 gaaggttcgg tgggccatgt gagaggtgtg ctagacgttt gtggagattc
1151 agactttggt tggtaggtct ggccatgcgg cgttacggtg atttgcaggt
1201 tacgcgtaaa cgccacacta ggagtgctat gcgacaatat ttaaactctt
1251 atgaggatca gactgatttg tggcagtctt atgaaggcgt cacacctgaa
1301 gaagcattga ttgtagccga tcagcacctg ttcgtggatg cggttgatca
1351 gctagcgtcg ggtggtgggg atttgcaatg tgtgcgaacg gcccagacta
1401 tctccgagcg ctatggcgtg aaaaaccccg ctttacagga caagttggac
1451 gagtttgcta ggcgattggc tattcaggtt aggtttgagg atactgacgc
1501 tactcctggg tttctggatt tgagaaacgc gtctatgcaa gaggtattgg
1551 actgtgattt gtctgagcag actattaatc cccaatacaa ccagatttgc
1601 gcccttcagc acatgtttgc tatggtaggt aagccggcgt ttaccgattt
1651 cgttattgct tacaaaggta cttattatcc gtgtgttata gaagcccaaa
1701 ggaaacacgc ggagatgctg gggactgatc ctgatgacaa atggggtccg
1751 ttggaatgga tgtactgtgt cattatggtc ggttctttag cgtctttcgg
1801 atttgccacg gtgaaaggaa ttgtaaagtt atcacaaatg gtcaaaaact
1851 ggctgcgact tcgtgctctg cgggcgttac cttcggtcac gcatggaggg
1901 gacggaggcg acggtggttt accgtttttt gagatggagg acttcactgc
1951 cagattaaga gtattgaatg aatttgtcgc taatatggga gaacaagttg
2001 ttgacaccag tgtagaagat ttacggagag atttggtatc ggtgttaact
2051 gcgcactctg gatcggaacc acctgctgtt gataggccat atcttgaagg
2101 tgtgggtatc ggtagagagg ttgatgaact tcctgcatct accgagattg
2151 agggtgagca gggagagtca ttgtttgatc ccggtttgag aatcaagcga
2201 tgggagactg aagcggctgt tccgaaagga gtaggcggtt tttcttcttt
2251 cattagaacg tccgggtctg tgagcggaag agccaggatg tcggctcaga
2301 atagtgttag tagagttaag ttgaggaatg ctagtatgat gaagtctaag
2351 aggctaatgg cggcttagat tggtgttttt cattgcattc tcgtctttgc
2401 ttttcaagat gactgtgagt actattcata gttgtgagcg ctgtttagag
2451 ggtcgtacta gtttaaggtg tgaaaataag tataggttat ctgtgtatca
2501 gtctcgtcag gtagagaaat cagcttacgc ttgcaagatt tctcagtttg
2551 gtgtaccgtg tggcatgcca gcccagtttg aactggatgg ggaaactttg
2601 aaggttgtct gtgatgggta ttgtggttta aaacacaaga acatggcaga
2651 atctggtagt tggcgcggca ccttgttagt gatactccaa aaggagttgg
2701 aagctctgca gctgaaggaa gagcagttga agacgaggat agcggaagtc
2751 actcagcaac atgatttggt catggctgag acggctgctg tccttagacc
2801 tgattctcct ccgaaggcta tggtcacgac taattcgcgt gtaaagtacg
2851 taaggcgtaa acccgcaccg cgtatgtgat gcggcttagt cctagaagca
2901 actaggaccc ggttctggac ggaaccagct aagggctaaa aaccgttctt
2951 ttgtggagag gtgtgaggtg gtttaaagtt agtttgtgtt atatgtatta
3001 ccactttttc atgtatcgtg ggagcgtata gtgtttttaa gagtgctata
3051 tttactgtat ttctttatgc agttgtgttt ccataaaaaa aaaaaaaaaa
3101 aaaaaaaaaa agagcctact tacttggacg gaaagtaagc ggtcctgtgt
3151 cgatacacag gggtctgcgt ttctgagacc taaaatttca gaaaagccta
3201 cacactcggg ttgagggtgt gcgtgatttc aacgatatga aattgtccac
3251 cgcaatggac attaaatgtt gcgggtctta tccctaggcg ctacagatgt
3301 aattaacgaa agatctgtaa ttgtcgatga tgggatgtgg tgggttacca
3351 cagctgctag gacacagcag ttaagagggg ttcgactccc cccctgaacc
3401 ggagggttat ccggccca