Sequence of DPV Soybean dwarf virus
Soybean dwarf virus genomic RNA, complete genome, strain:DP.
ACC No: AB038150
Dated: 2003-07-07 | Length: 5708 | CRC: 1446374790
!!NA_SEQUENCE 1.0
ID AB038150 standard; RNA; VRL; 5708 BP.
XX
AC AB038150;
XX
SV AB038150.1
XX
DT 12-AUG-2001 (Rel. 68, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 3)
XX
DE Soybean dwarf virus genomic RNA, complete genome, strain:DP.
XX
KW .
XX
OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5708
RA Terauchi H., Kanematsu S., Hidaka S.;
RT ;
RL Submitted (08-FEB-2000) to the EMBL/GenBank/DDBJ databases.
RL Hidetaka Terauchi, Tohoku National Agricultural Experiment Station,
RL Department of Crop Breeding; Akahira 4, Morioka, Iwate 020-0123, Japan
RL (E-mail:tera@tnaes.affrc.go.jp, Tel:019-643-3524)
XX
RN [2]
RA Terauchi H., Kanematsu S., Honda K., Mikoshiba Y., Ishiguro K., Hidaka S.;
RT "Comparison of complete nucleotide sequences of genomic RNAs of four
RT Soybean dwarf virus strains that differ in their vector specificity and
RT symptom production.";
RL Arch. Virol. 146:1885-1898(2001).
XX
DR GOA; Q91QP6.
DR GOA; Q91QP8.
DR GOA; Q91QP9.
DR SPTREMBL; Q91QP6; Q91QP6.
DR SPTREMBL; Q91QP7; Q91QP7.
DR SPTREMBL; Q91QP8; Q91QP8.
DR SPTREMBL; Q91QP9; Q91QP9.
DR SPTREMBL; Q91QQ0; Q91QQ0.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5708
FT /db_xref="taxon:12049"
FT /mol_type="genomic RNA"
FT /note="Soybean dwarf luteovirus"
FT /organism="Soybean dwarf virus"
FT /isolate="M96-1"
FT /strain="DP"
FT CDS 127. .1212
FT /codon_start=1
FT /db_xref="SPTREMBL:Q91QQ0"
FT /transl_table=1
FT /gene="ORF1"
FT /product="replicase"
FT /protein_id="BAB62834.1"
FT /translation="MFNFDSLVTATARVVKDFISFCYNRARHVYYALKRWLWELQGVFA
FT AHDAFVDMCYDAMYGVEEFEWELQKQYSTAEIDVQLAEHEYKRLLADGAPLGSWPQPCA
FT PQGSFRSSDDFDVAARAAEANPIVDPQPSLIKGCGDKSPSNPTRIEKFINLVQKKEVLS
FT ATEALIKHTYEEQIGESPFGKWFNTLPNRMNYIKRAAAKQAKAAKRSKSVRQMVTEVNV
FT IPDFISCCDVVQVDTGEKLPTKKDKEGNELPPEPKLKMFRRVKPEHVGDARKYICQHIR
FT NNNMRLIDGSDVSHATINRYALKFCEDLELDMTSTEMLIKYAMVMVPLPRKSDIEAAKI
FT VQSPAARQIRHELGVLNAEVF"
FT CDS <1197. .2810
FT /codon_start=1
FT /db_xref="GOA:Q91QP9"
FT /db_xref="SPTREMBL:Q91QP9"
FT /note="ORF2 is translated from ORF1 by frameshifting."
FT /transl_table=1
FT /gene="ORF2"
FT /product="replicase"
FT /protein_id="BAB62835.1"
FT /translation="RRGFLEGLCSDSGFESPFSILGLPEIVVRSGAIPRKSRSTINYLS
FT QFSLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVLPYKNIPGIFSNLDYFRKSIVDK
FT VGCPRTFSPEELAATYHSGKRTLYNAAVQSLKRKAVERSDANVTAFLKMEKHLMCKKIA
FT PRLICPRNKRYNVELGRRLKFNEKKFMHAIDSTFDSPTVLSGYDSFKVGKIIANKWSKF
FT KRPVAIGVDASRFDQHVGVEALQWEHSIYNGAFNDPILKELLHWQTENKIMLFVEDKIL
FT KFKVKGHRMSGDINTSSGNKLIMCGMMHYYFKSLGVKAELCNNGDDCVIICEKKDENKF
FT SHMHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMVRKQESISKDAHSLISM
FT ASAEDVKTFMSATAQCGMILNSGVPVLDAFHKCLYKASGYKKVSQEAIERIVSFGTQDK
FT LGLRKERVEEPITMDNRLSYWESFGVDPQTQVLVERYFDNLQVHIEPRGVKRLTPLLDK
FT TLLSIASVARTSVSLPILSK"
FT CDS 3018. .3620
FT /codon_start=1
FT /db_xref="GOA:Q91QP8"
FT /db_xref="SPTREMBL:Q91QP8"
FT /transl_table=1
FT /gene="ORF3"
FT /product="coat protein"
FT /protein_id="BAB62836.1"
FT /translation="MVAVSNVTIQRRRNRRVARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPK"
FT CDS 3034. .3603
FT /codon_start=1
FT /db_xref="SPTREMBL:Q91QP7"
FT /transl_table=1
FT /gene="ORF4"
FT /product="movement protein"
FT /protein_id="BAB62837.1"
FT /translation="MSQYNDDAIVESHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE
FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY
FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV
FT KTSSRSTIRGTETPRSQAPSRSRSLS"
FT CDS <3621. .5090
FT /codon_start=1
FT /db_xref="GOA:Q91QP6"
FT /db_xref="SPTREMBL:Q91QP6"
FT /note="ORF5 is translated from ORF3 by readthrough"
FT /note="readthrough domain (RTD)"
FT /note="readthrough product"
FT /transl_table=1
FT /gene="ORF5"
FT /protein_id="BAB62838.1"
FT /translation="VDGEPGPKPGPDPTPPPAPPPEPTPAKHERFIVYTGTLSTLISAR
FT QNSDSISLYSIRDQRIRYIENENANWANIKAQWYSQNSVEAVPMFIYPVPQGTWSIEIS
FT CEGYQATSSTTDPHRGKSDGVIAYDDDQNKVWNVGVQNNVTITNNKADADWKYGHPDLT
FT INGERFDQRQVVEKDGTISFHLVTTGPNASFFLVGPPVKKIAKYNFCISYGAWTDRDME
FT FGLVSVVLDEHLEGVRGSQYVRKTLRPGHISVNRSHRLQEMPPMREDFSEEDNSSSDSN
FT TYKTDNSPMTVHFVKAGDKESYTTDQSDDVEPSPHDADVMKFSGFVGAKDRFVLQGADP
FT IGPGDRSVRRFKPSATLKSAFHSGPTPDELYNAGAEQADHDFEHFVSRGKEKLQDEDPM
FT AKLEREAEDLKPDSDNEDNDYDRTAPVFNPADGDPWSGIKIKPRLKDQDMRSTLSTGTL
FT KGGSLKPKKELPPRFEPAPKSVLDRIRRRQV"
XX
SQ Sequence 5708 BP; 1700 A; 1236 C; 1320 G; 1452 T; 0 other;
AB038150 Length: 5708 July 15, 2003 09:12 Type: N Check: 7260 ..
1 agtaaagttg acacctttac agaagtgttc ttgctagtaa gagttatttc
51 cttgtgaagt aatacaagaa cctcctcccg gcatcttcgt atcgtgtttg
101 aggaatctct agtgttattg ttagttatgt ttaacttcga tagcttagtt
151 acagccaccg ctagggtggt taaagatttt atttcttttt gctataatag
201 ggcacggcat gtttattatg ccctaaaaag atggctctgg gaactccagg
251 gtgtatttgc tgcacatgac gcctttgtcg acatgtgcta tgacgccatg
301 tatggcgttg aggagttcga gtgggaactg caaaagcagt attccactgc
351 agagatcgac gtgcaattag ctgagcacga atacaagcgc ctacttgccg
401 acggcgctcc actagggtca tggccacaac catgtgcgcc ccaaggctca
451 ttcaggtcgt ctgacgactt cgatgtagct gctagggctg ctgaggcaaa
501 ccctattgtg gacccacaac cctccttgat taaagggtgt ggcgataaat
551 caccttccaa tcccactagg attgagaagt tcatcaacct cgtccaaaag
601 aaggaggtac tttccgctac tgaggcgcta atcaaacata catatgaaga
651 gcaaatcggt gaatcaccat tcggaaagtg gttcaacact ctgcccaata
701 gaatgaatta cataaagagg gcagcagcaa aacaagccaa ggcggctaaa
751 cgatctaaat ctgtccgcca aatggttacc gaggtaaacg tcattcccga
801 ctttatctct tgctgtgatg ttgtccaggt ggacactggt gaaaagctcc
851 ctactaagaa agataaagaa gggaatgagt tgccacctga gcctaagctt
901 aaaatgttta gaagggtgaa gcctgagcat gttggtgatg ccaggaaata
951 catctgtcaa catattcgca acaataatat gaggttgata gacggctctg
1001 atgtttctca tgcaaccatc aaccgatatg cgctcaagtt ttgcgaagac
1051 ttggagcttg atatgaccag cactgaaatg ctcatcaaat atgctatggt
1101 catggtccca ctccctcgaa aatctgatat tgaggctgct aaaatcgtcc
1151 aatctcctgc tgccaggcaa ataaggcatg agttgggcgt gcttaacgcc
1201 gaggtttttt agaggggctc tgctccgact ctggttttga atccccgttt
1251 tctattttgg ggttgccaga gatcgtggtg cgaagtgggg ctatccctag
1301 gaagagtcgt agtactatta attatttgag tcagtttagt ttaggtctag
1351 attaccaatg ccccaatccc agtttgcaca acgcattggt ggcggttgaa
1401 cgtagagtgt tcaccgttgg gaaaggaaat gaggtagtgc taccttacaa
1451 gaacatacca ggaatcttct ctaatcttga ttatttccgc aaatctattg
1501 tggacaaggt tggttgcccc aggacgttct cccctgaaga acttgcagca
1551 acgtatcact ctggtaagag aacgttgtat aatgctgctg ttcaaagtct
1601 taaacgtaag gctgttgaga ggagtgacgc gaatgtgaca gctttcctta
1651 agatggagaa gcaccttatg tgtaagaaga tagcacccag gttgatatgt
1701 ccccgcaaca aaagatataa tgttgaattg ggacgtcgat tgaaattcaa
1751 tgagaagaaa ttcatgcatg caatcgactc aacttttgat tccccaactg
1801 tattaagtgg atatgacagt tttaaagttg ggaagataat agccaataaa
1851 tggtcgaaat tcaaacgacc agttgcaata ggtgttgatg caagcagatt
1901 tgatcaacat gtgggggtag aagcactcca atgggagcac tcaatctata
1951 acggtgcatt taatgatccc attttgaagg agttgctaca ctggcaaaca
2001 gagaacaaaa taatgctgtt tgttgaagac aaaatcctca agttcaaggt
2051 caaaggacac agaatgtccg gtgacattaa cacctcttct ggcaacaaat
2101 taatcatgtg tggtatgatg cactactact tcaagtcact tggagtcaaa
2151 gccgaactct gcaataacgg cgatgattgt gttatcatat gcgagaagaa
2201 agatgaaaat aagttctcac acatgcatag ctggtttaaa gactatgggt
2251 ttgacatgca gattgagact cctgtctaca agattggaca gatagagttt
2301 tgtcaaagta aaccagttaa aatcaatggc tattatagaa tggtgcgtaa
2351 acaagaaagc atatccaaag acgcccattc cctcatttcc atggcatcag
2401 ctgaagatgt caaaacattt atgagtgcca ccgctcaatg cgggatgatc
2451 ttgaatagtg gagtacctgt tcttgatgct tttcacaaat gcctatacaa
2501 agcatcgggg tacaagaaag tatcgcagga agcgatcgag aggatagtct
2551 ccttcggaac gcaggacaaa ctcgggctca ggaaagagcg agttgaagaa
2601 ccaataacga tggataatag gttgagttat tgggagtcct ttggggttga
2651 cccgcagaca caggtccttg tcgaacgata ttttgacaat ctgcaggtcc
2701 atatcgaacc ccgcggcgta aagagattga cgcctttact cgataaaact
2751 ttgctttcaa ttgcgagtgt agcacgaaca tctgtgtcgc taccaatact
2801 ttcaaaatag aagcactcat aatcaccata gtagttatag tactagtagt
2851 agttagctgt ttagattacg ctagttcgta caagtaagtt gcaacggatt
2901 accgattttt atctgggttt gctatcggct ttatagctag cataccaata
2951 tcaatattgg caatttactt tgtttaccta aaaatttcaa agaatctgag
3001 aggaatcatc aacgaatatg gtcgcggtta gcaatgtcac aatacaacga
3051 cgacgcaatc gtagagtcgc acgaagcgct ccacgagttc agctcatggc
3101 tattccaacg accaccggcg caacacagcg cagaagaaga caacgacgac
3151 gaaggagaaa taatagagga ggaggcaata tttccggagg atcaggcaag
3201 gctcacacat tccagttttc gaaggacggc atcaatggca gttccaaggg
3251 aactatcact ttcgggccgt ctttatcaga gtgcaagcca ctctctgatg
3301 gaatactcaa ggcctaccat gaatataaga tcacgagtat cttattacag
3351 ttcatctccg aggcctcttc cacctcgtca ggctccatcg cttatgagct
3401 tgacccacac tgcaagtact ccgaaattca atcgctactc aataaattct
3451 caattacaaa gagcggttcg aaacgattcc ccaccaaggt tatcaatggc
3501 ctcgaatggc atgataccag tgaagaccag ttcaaggtcc actataaggg
3551 gaacggagac gccaagatcg caggctcctt caagatcacg atcgttgtct
3601 taactcagaa tcccaaatag gtagacggag aaccggggcc gaaaccaggt
3651 ccggacccca cacccccacc agcaccacca cctgaaccga cgccagccaa
3701 acatgaaaga ttcattgttt ataccggtac attgtcaaca ctcatcagtg
3751 ctcgacaaaa ctcagacagt atatcactct actcgattag agaccagaga
3801 atcagatata ttgaaaacga gaatgcaaac tgggcgaaca tcaaagcgca
3851 atggtattca cagaattctg tggaagcagt gccaatgttt atctacccag
3901 ttccgcaagg tacttggtca attgagatct catgtgaagg ctaccaggcg
3951 acatcaagca ccacggaccc ccaccggggg aagtccgatg gagtgattgc
4001 ttatgatgat gatcaaaata aggtgtggaa tgttggtgtg caaaataatg
4051 taaccataac caacaacaaa gccgatgctg attggaaata cggccatcct
4101 gatttaacaa tcaatggtga acgttttgac caaaggcaag tagtcgagaa
4151 agatggaaca atctcgttcc atttagtaac tactgggccc aacgcgagtt
4201 tctttttagt cggccctccc gttaagaaga ttgccaagta taacttctgc
4251 atatcatatg gtgcttggac tgatcgcgac atggagtttg gtttggtctc
4301 tgttgttctc gacgaacatt tagagggtgt tagaggttct cagtacgtta
4351 ggaaaacgct aagaccaggt catattagcg tcaatcgttc ccaccgattg
4401 caagaaatgc ctcccatgcg agaggatttc agtgaggaag ataatagtag
4451 tagtgatagt aatacatata aaacagacaa ctctcccatg accgttcact
4501 ttgtaaaagc aggtgacaag gagagttata caacagatca atcagacgat
4551 gttgaaccct caccccatga tgctgatgtc atgaagttct ccgggtttgt
4601 tggagccaaa gacaggtttg tgttgcaagg agctgatcca atcggccctg
4651 gtgatagatc tgtgcgtcgc ttcaaaccgt ctgctacctt aaagtctgca
4701 ttccattcgg gaccgactcc tgatgagttg tataatgctg gagctgaaca
4751 agcggatcac gacttcgaac actttgtctc ccgaggcaaa gaaaagctac
4801 aggatgaaga tccaatggct aaactcgaaa gagaggctga ggacttaaaa
4851 cctgatagtg acaacgaaga taacgattat gatcgaaccg ctcctgtgtt
4901 caacccagca gatggtgacc cttggtccgg cattaaaatc aagccaagat
4951 taaaagatca agacatgagg tctaccttaa gcactggcac cttgaaaggt
5001 ggttcactga aaccgaagaa agaactacct cctaggtttg agccagcgcc
5051 aaagtctgtt ttagatagaa ttagacgtag gcaagtctaa tcttgcacca
5101 atatagaagt agttagcgct ttccattatt atttatagga gccaaatttg
5151 gtgagtcccg atcgatggat cctggtaaac aggtgcggtg aacaaaaagc
5201 cggtaatctc ggggagatgt ctactcccgt cgtatcactt tcggttgcat
5251 atccaaagaa taaccctata cttaataact aaaaattaga tagtttccgc
5301 ctctcttgca aaccacatgc aagatgcgag cttgtgggga gtaccttccc
5351 ttgaataagg aaggttgaaa gtttctggtt cccaaaccat tgatcaaaat
5401 tggctctgct tctggtgatt acactgccgc tgaatcaaca gcgtaaacaa
5451 atttttactg gctactccgt gaaaagagag tggctggtac gcccctttga
5501 tggcgttaaa tgaaagcgta ggttttacga caccctctgc caaggacagc
5551 caaccttgcg aagtcgggag aatacccgat agactgtggt ctagtattaa
5601 aatgactcga gggctcttcc tcgttaaaaa gggggcgacg gcaggaaact
5651 gctgtcatta ggcgaaagcc tctttgttgt taaggtggcc atcaggtcca
5701 cctgcccc