Sequence of DPV Torque teno tamarin virus
Torque teno tamarin virus DNA, complete genome, isolate: So-TTV2.
ACC No: AB041960
Dated: 2009-11-02 | Length: 3371 | CRC: -1076008082
ID AB041960; SV 1; circular; genomic DNA; STD; VRL; 3371 BP.
XX
AC AB041960;
XX
DT 15-DEC-2000 (Rel. 66, Created)
DT 02-NOV-2009 (Rel. 102, Last updated, Version 4)
XX
DE Torque teno tamarin virus DNA, complete genome, isolate: So-TTV2.
XX
KW .
XX
OS Torque teno tamarin virus
OC Viruses; ssDNA viruses; Anelloviridae; Epsilontorquevirus.
XX
RN [1]
RP 1-3371
RA Okamoto H.;
RT ;
RL Submitted (19-APR-2000) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Okamoto Jichi Medical School, Immunology Division and
RL Division of Molecular Virology; 3311-1 Yakushiji, Minamikawachi-Machi,
RL Kawachi-Gun, Tochigi 329-0498, Japan
XX
RN [2]
RX DOI; 10.1006/viro.2000.0588.
RX PUBMED; 11080484.
RA Okamoto H., Nishizawa T., Tawara A., Peng Y., Takahashi M., Kishimoto J.,
RA Tanaka T., Miyakawa Y., Mayumi M.;
RT "Species-specific TT viruses in humans and nonhuman primates and their
RT phylogenetic relatedness";
RL Virology 277(2):368-378(2000).
XX
CC Partial sequence of this TT virus isolate (nt 305-404) has been
CC deposited as accession no. AB032316.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3371
FT /organism="Torque teno tamarin virus"
FT /isolate="So-TTV2"
FT /mol_type="genomic DNA"
FT /isolation_source="Cotton-top tamarin"
FT /note="originally submitted as 'Torque teno virus'"
FT /note="synonym: TT virus"
FT /db_xref="taxon:687382"
FT CDS 570. .872
FT /codon_start=1
FT /transl_table=1
FT /note="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:Q9DUC2"
FT /protein_id="BAB19315.1"
FT /translation="MQRRTQELIWKELVDNSHKLFCNCMDPQNHYRLICQNLNREPGEP
FT WRTAGGIGEGGAGGDGAAAGGEGDVHGRPAGAEDGEDGADAAMAAALAAFEDATG"
FT CDS 704. .2842
FT /codon_start=1
FT /transl_table=1
FT /note="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:Q9DUC1"
FT /protein_id="BAB19316.1"
FT /translation="MAYGRRYWRRRRWRRRGGRWWRRRRPWKTRWRRRRRRWRRRRYGR
FT RARRFRRRHRVGRWRKLFRRVKSRVVRQWDPNVTRRCMINGYDHALFWGQQAQHRILYD
FT NLPWPIKKEGTQEGGSMNMMQLTLQFLYKDNLAGRNRWTRSNWDMDLAKYHETTLLFPR
FT HRNYSYVVFITRGPNDILDEHTYPGLHPEKMLGRRKKIVVWSKDLRPHGKNYIRVRVPP
FT PQVFKNQWYFQRDICQMPILTLGFAAFDPVNVTLAGNMANSSIILWGIPYWSRPMPYNT
FT WYDYWTKCAGPQNIPWSDRQTNIAAGITQKSAQTCLKLKNKHFGLTNTAIVSDYDKDNI
FT DKNTKQIKTIVMSLNRWYPKWPMKWKDAGDINTQTPFPYRYSWREDQGWGNKVRLWTRE
FT CRTDIPEETLGIENMPLYVLMNGYIDYVTNHSTHSPLNWVVSVFCPYTDPPMTNVIPVG
FT KDWFIQNVEPGENKYPSDNADNTFAPGEKTKIKNYDSSKDEFTGNVIRAPDVYDSLPAQ
FT QALYIASPFSLKWAQTTGSIVFFYQSKWTWGGDFPRQRPIIDPCNRPKWGGLPVTGYDE
FT TGLLLQNPEKAEARARGHLGDLRRGDLTKTALKRLMELTSTEEGSPQKKKRRDKEVRTT
FT ADLLRPEDVYCWMSPTPETPPKAGKTPESSFAETYDNHTKLAKRVKKEIHNQNRRHRLL
FT LAHLRRERDRLLGHHLLR"
FT CDS 2424. .2903
FT /codon_start=1
FT /transl_table=1
FT /note="ORF3"
FT /db_xref="UniProtKB/TrEMBL:Q9DUC0"
FT /protein_id="BAB19317.1"
FT /translation="MTRQDYYCKIRKKRRPGRGDTSATSDGGTSPKRPLRDSWNLLPQR
FT RAAHKKRREETRRSELPPTYYGPKTSTAGCRRPQRRPRKLERRQSPALRKPTTTTPNSR
FT KGSRKRSTTRTEDTDSSWPTYEESETDSWVTTSSDSDEYPPKTRRAHKTAPRLRL"
FT CDS 2920. .3132
FT /codon_start=1
FT /transl_table=1
FT /note="ORF4"
FT /db_xref="UniProtKB/TrEMBL:Q9DUB9"
FT /protein_id="BAB19318.1"
FT /translation="MTQKDWGEENQGMLTGATWLDECQSAYLWGRKPRHSWADPPESLD
FT NWSFKTHPFHPWRINFTLTPPPETP"
FT repeat_region 3301. .3371
FT /rpt_unit_seq="GC"
XX
SQ Sequence 3371 BP; 1115 A; 937 C; 842 G; 477 T; 0 other;
ab041960 Length: 3371 02-NOV-2009 Type: N Check: 1379 ..
1 aaaccctgat ggaacgaaaa aaatacaaat cccgcgtaca gcgaaaaccc
51 cccccccacc cccgattggt ccaaatacaa aacctcattt gcatacacac
101 aaaaagggga agtgaacctg attggacgaa accagaagac ctcatttgca
151 taccacgcaa atgaactgac gcaaaaccgc cgaaattcgg cggaaggagg
201 aaacttctcc cattggacag aaccagaaga cctcatttgc attgacgtgt
251 cacttcctca ttggacgaaa actatataaa gaaccggggt gacgaatggc
301 tgagtttact ccgccgggtg taggagacgc gaccggaggg agaggcatcc
351 gcagcccgtg ggcgggaccc gcagagcatt ccgaaggtat gcggcgcgtg
401 taggggcaat tcgggcacgg gctcccgggc ggaccgggca aggttctctg
451 gggtgcccgc ggcgaagccg cccgtactaa ggcgataatg aaactaacct
501 tagctacctg ctgccgcaac agaaccgggg ccgaccctgg cgagatacta
551 caaactacag acggcgccga tgcagcggcg gacccaggag ctgatatgga
601 aggagctagt tgacaacagc cacaagctat tctgtaactg catggacccg
651 cagaaccact accgcctcat ctgccagaac ctgaaccggg aaccgggaga
701 gccatggcgt acggccggag gtattggaga aggaggcgct ggaggagacg
751 gggcggccgc tggtggcgaa ggagacgtcc atggaagacc cgctggcgca
801 gaagacggag aagatggcgc cgacgccgct atggccgccg cgctcgccgc
851 tttcgaagac gccaccgggt aggtcgctgg agaaaactat ttaggcgggt
901 gaagagcagg gtagtcagac aatgggaccc caatgtaacc agacgatgca
951 tgataaacgg gtacgaccac gcactgttct ggggacaaca ggcacaacac
1001 agaatactat atgacaacct accctggcct ataaaaaaag aagggacaca
1051 agagggaggc agtatgaaca tgatgcaact cacgttacaa ttcctgtaca
1101 aggacaacct agcagggaga aacaggtgga cgagaagtaa ctgggacatg
1151 gacctagcaa aataccacga aaccacctta ctgttcccca gacacagaaa
1201 ctacagctac gtagtgttca tcaccagagg gccaaacgac atcctagacg
1251 aacacacata cccagggctg cacccagaaa agatgctagg caggagaaaa
1301 aagatagtag tatggagcaa agacctgaga ccacatggga aaaactacat
1351 aagggtcagg gtaccaccac cacaagtatt caaaaaccaa tggtacttcc
1401 agagagacat ctgccaaatg cccatcctga cactaggttt cgccgccttt
1451 gacccagtaa acgtcacatt agcgggaaac atggccaaca gctccataat
1501 cctctgggga atcccatact ggagcagacc catgccatac aacacctggt
1551 atgactactg gaccaagtgc gcaggaccac aaaacatacc ctggtcagac
1601 agacaaacca acatagcagc gggaataact caaaaatccg cacaaacatg
1651 cctaaaactg aaaaacaaac acttcggact aacaaacaca gccatagtca
1701 gtgactacga caaagacaac atagacaaaa acacaaaaca aataaaaaca
1751 atagtaatga gcctaaacag atggtaccca aaatggccaa tgaaatggaa
1801 agacgcagga gacataaaca cacagacacc attcccatac agatactcat
1851 ggagagaaga ccaagggtgg ggaaacaaag tcagactatg gaccagagag
1901 tgcagaacag acataccaga agaaacacta ggaatagaaa acatgccact
1951 gtacgtactg atgaatggct acatagacta cgtcacaaac cacagcacac
2001 acagcccact aaactgggta gtctcagtct tctgccctta cacagacccg
2051 ccaatgacca acgtaatccc agtagggaaa gactggttca tacaaaacgt
2101 agaaccggga gaaaacaaat acccctcaga taatgcagac aacacatttg
2151 caccaggaga aaaaacaaaa attaagaact acgacagcag caaagacgaa
2201 ttcacaggaa acgtaataag agccccagac gtatacgact ccctaccagc
2251 acaacaagca ctgtacatag ccagtccctt cagcctaaaa tgggcacaaa
2301 ccacaggctc cattgtcttc ttttaccaga gcaaatggac ctggggcggg
2351 gacttcccca gacagagacc aatcattgat ccgtgcaaca gaccgaagtg
2401 gggagggcta cccgttaccg gttatgacga gacaggacta ttactgcaaa
2451 atccggaaaa agcggaggcc agggcgaggg gacacctcgg cgacctcaga
2501 cggggggacc tcaccaaaac ggcccttaag agactcatgg aacttacttc
2551 cacagaggag ggcagcccac aaaaaaagaa gagaagagac aaggaggtca
2601 gaactaccgc cgacctacta cggcccgaag acgtctactg ctggatgtcg
2651 ccgaccccag agacgccccc gaaagctgga aagacgccag agtccagctt
2701 tgcggaaacc tacgacaacc acaccaaact cgcgaaaagg gtcaagaaag
2751 agatccacaa ccagaacaga agacacagac tcctcctggc ccacctacga
2801 agagagcgag accgactcct gggtcaccac ctcctccgat agcgacgagt
2851 accccccaaa aaccagaaga gcgcacaaaa ctgcccctcg ccttcgccta
2901 taaagacctc tgggaagcca tgacccaaaa agactgggga gaagaaaacc
2951 aaggcatgct aaccggagcc acgtggttag acgagtgcca atcagcgtac
3001 ctgtggggca ggaaacccag acacagctgg gcggatcccc cggaaagcct
3051 agacaactgg tcatttaaaa cacacccctt tcacccatgg agaataaact
3101 tcaccctgac cccgcccccg gaaaccccct aaataaaaaa tgctcgaggt
3151 ggtcgataaa gggagcccgg agtccgttta tataagttca cgccgagaac
3201 acaaaatggc gaagacacaa gatggcgggg ggtgaaaggt cacgggggcg
3251 taaaaaaact aaacagcctc gaagggtgaa actcgaccac ctcgacgtaa
3301 ggggggggcg ggtgaccgcc ccccccttag accccccccg gggggggcag
3351 agcccccccc tgcacccccc c