Sequence of DPV Watermelon silver mottle virus
Watermelon silver mottle virus nss, np genes for non-structural S, nucleocapsid protein, complete cds, isolate: WS-Y.
ACC No: AB042650
Dated: 2008-12-13 | Length: 3558 | CRC: -605664815
ID AB042650; SV 1; linear; genomic RNA; STD; VRL; 3558 BP.
XX
AC AB042650;
XX
DT 11-JAN-2001 (Rel. 66, Created)
DT 13-DEC-2008 (Rel. 98, Last updated, Version 6)
XX
DE Watermelon silver mottle virus nss, np genes for non-structural S,
DE nucleocapsid protein, complete cds, isolate: WS-Y.
XX
KW .
XX
OS Watermelon silver mottle virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RP 1-3558
RA Okuda M.;
RT ;
RL Submitted (15-MAY-2000) to the EMBL/GenBank/DDBJ databases.
RL Contact:Mitsuru Okuda Kyushu National Agricultural Experiment Station,
RL Plant gene control; 2421, Suya, Nishigoshi-machi, Kikuchi-gun, Kumamoto
RL 861-1192, Japan URL :http://ss.knaes.affrc.go.jp/
XX
RN [2]
RX DOI; 10.1007/s007050170183.
RX PUBMED; 11315646.
RA Okuda M., Taba S., Tsuda S., Hidaka S., Kameya-Iwaki M., Hanada K.;
RT "Comparison of the S RNA segments among Japanese isolates and Taiwanese
RT isolates of Watermelon silver mottle virus";
RL Arch. Virol. 146(2):389-394(2001).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3558
FT /organism="Watermelon silver mottle virus"
FT /host="Citrullus lanatus"
FT /lab_host="Tetragonia expansa"
FT /isolate="WS-Y"
FT /mol_type="genomic RNA"
FT /country="Japan"
FT /note="synonym: watermelon spotted wilt virus"
FT /db_xref="taxon:43141"
FT 5'UTR 1. .65
FT CDS 68. .1387
FT /codon_start=1
FT /transl_table=1
FT /gene="nss"
FT /product="non-structural S"
FT /inference="non-experimental evidence, no additional
FT details recorded"
FT /protein_id="BAB20587.1"
FT /translation="MSTAKNAASEFIKSYGTRDNKAVNDCYSVFTGEGVNFLNLFMHNN
FT AGIKSAFSINDLGRNEDVKIHEAEVVDSCHDYHYFEKFGLDITFCEHEMNLVVRKPGVK
FT NTGCKFTMHNQIFNPNSNILNMTPGTISEDAFYDRSKIASSGLLPSGWCLDECYKNNFY
FT IATNGDLTLDYGFSVMGKTTSYWRESMSREKILSVKQKCFSDNTVPTNRLLSTSTVKGI
FT QLGSELAFDTTVILSCKQNLNIDLKSQYRVSFHGIQEEGAFARTFCVPFENKSRMISFY
FT AKTVADNSNERTTLIIKVVTKTVDSHLVIPIRNHINCEKKIGARVGLVDFCDSDPNYNQ
FT LIVKNLLSVHTQFAINLSEVIQKPVIVFKMYDKELHNDYTEVSGRILNYQIDSEGNIYF
FT LSKTLEVLPKSLSTLSYLGSIAPVQWKECLEHQHFVVKAE"
FT CDS complement(2666. .3493)
FT /codon_start=1
FT /transl_table=1
FT /gene="np"
FT /product="nucleocapsid protein"
FT /inference="non-experimental evidence, no additional
FT details recorded"
FT /protein_id="BAB20588.1"
FT /translation="MSNVKQLTEKKIKELLAGGTADVEIETEDSTPGFSFKAFFDNNKN
FT IEITFTNCLNILKCRKQIFAACKSGKYNFCGKNIVATSVDVGPEDWTFKRTEAFIRTKI
FT VSMVEKSKNEAARQEMYGKIMELPLVAAYGLNVPSSYDSCALRMMLCIGGPLPLLSSIR
FT GLAPIIFPLAYYQNIKKEKLGIKNFSTYEQVCKVAKVLSASQVEFKDDLDVMFKQAVKI
FT LSESNPGTASSISLKKYEDQVKYMDRIFSANLSVDDYGDHSKKSSKPSTSLEV"
FT 3'UTR 3494. .3558
XX
SQ Sequence 3558 BP; 1201 A; 589 C; 574 G; 1194 T; 0 other;
ab042650 Length: 3558 13-DEC-2008 Type: N Check: 7527 ..
1 agagcaatcg aggcaaataa taattctaga aaaaacaacg ttatactcaa
51 gtaatactat ttcaggcatg tctactgcaa agaatgctgc ttcggaattc
101 atcaaaagtt atggcacaag agacaacaaa gcagtcaatg attgctactc
151 tgtattcact ggagaaggtg tcaactttct caatttgttc atgcataata
201 atgcaggtat taaatctgca ttcagcatca acgatctggg caggaatgaa
251 gatgtcaaaa tccatgaagc tgaagttgtt gattcatgcc atgattatca
301 ttattttgaa aaatttggac tagacataac attctgcgag cacgaaatga
351 atttagttgt gaggaaacca ggtgtgaaga acacaggctg caagttcaca
401 atgcacaatc aaatctttaa tccaaattct aatatactga acatgacgcc
451 cggaacaatt tcagaagatg ctttctatga cagaagcaaa atagcatcta
501 gtggactact tccttcaggg tggtgtttgg atgaatgcta taagaataat
551 ttctatatag ctaccaatgg agatcttacc cttgattatg ggttctctgt
601 aatgggaaaa acaacatctt actggagaga gagcatgtca agggaaaaga
651 tcttgtcagt taagcaaaaa tgcttttctg acaacactgt ccctaccaac
701 agattgctct ctacatcaac agtcaaaggc atccaacttg gttctgaact
751 agcttttgat actacggtta tactatcatg caagcaaaat ttaaacattg
801 atttgaaatc ccaatatcgt gtttcatttc atggtattca ggaagaaggg
851 gctttcgcaa ggactttctg cgtccctttt gaaaataaat ctagaatgat
901 cagtttttac gcaaaaactg ttgctgacaa cagtaatgag aggaccaccc
951 ttatcataaa agtggttaca aaaactgttg attcccatct tgtcattcct
1001 ataagaaatc atatcaattg tgaaaagaaa attggagcaa gagtaggtct
1051 cgttgatttc tgtgatagtg atcccaatta caatcaattg attgttaaga
1101 atctgttgag tgtccatact cagtttgcta tcaatttatc tgaagttatt
1151 caaaagccag tcatagtgtt caaaatgtac gataaagagc tccacaatga
1201 ttatacagaa gtttccggga gaatcctgaa ttaccagata gattcagaag
1251 ggaatattta tttcctctca aagactcttg aggtcctgcc taaatcacta
1301 tcgaccctga gttatttagg cagcattgca ccagttcaat ggaaagagtg
1351 tttggaacat cagcactttg ttgtgaaagc agaataaact tgtttgaaac
1401 tcttatgcta tattagtatc tataaatagt atatcgtatg ttgtatgtct
1451 gcatttgtgc atttcaatta ataaattaat tttagtcata gatccaagta
1501 tttgtgtgct taggtatttt atttaagttt aaatttagta aagtaagctt
1551 atttgctaga attgaataaa taaatagata ataaatatat aagtaaatga
1601 agctaaaaac caaaaatcca taatcaagaa taaatccata aaattaagta
1651 aataaagtta gtcatgaatc tgaatgcttg tgtgtctgag tgtttaattt
1701 aggttcaagt ttagtagtat aagttagttt gtgtcgatta agtaaataaa
1751 cacataaata ggtgaaatta tcaaatcaaa agtctacaaa attaaataaa
1801 aactcataaa caaaaaaccc ataaaaatga aataacaaaa aaccaaaaag
1851 acctcgaaag gggcacattt ggctttatta ccctgagcaa tttctaattt
1901 acctgtaaga ataatgggat tatttggatc atgtgccttt gtttatgatc
1951 ataatgaaca agagtttgct tgaaattaat catagttgga atcttttagg
2001 tcatctgtgt aagttgtaat gaaggagcat tattgttagt tagtttattc
2051 tgatcacatg attaatacaa aaattctaac atgctatgac cagttgatca
2101 tgatattaga attcatgtaa attatatatt ctgattgatt cgagcagctt
2151 tagatctgta atctaactct aagattcttt atcagtattg acccttttat
2201 ctaactattt gtgtgttcaa cctaatcaat ctaaatcatt taaaaacttc
2251 caatctcaat aaattataaa gctaagtttg atcttatgat tgatcattac
2301 agttaaataa atcatattta cagaaaattg gccattggtt tgcctccgaa
2351 gaggtctttt ttgtttttat tttttttgat ttttttgggt tttttggatt
2401 tttttatata tatatatata tattgtttat ttatttgatt tatttatttt
2451 attgttttta tttattttat tcatttattt tatatctata taaacacaca
2501 catagttata actttataat agctacttgt ataattaaaa taagtatata
2551 gttatataag cacacacaaa aaacttaaac aaacataaat agatttattg
2601 aattatatag tcaagcataa acataaacac atatgtgcac tatatgcacg
2651 gttgacactt caaagttaca cttccaagga agtgctgggc tttgaacttt
2701 tctttgaatg atcaccataa tcatccacag aaaggttagc actgaagatc
2751 ctgtccatgt acttaacttg atcctcatat ttcttgagcg aaatagagct
2801 agctgtacca gggttactct cactgagtat tttgacagcc tgtttgaaca
2851 taacatccaa atcatcctta aattcaacct gtgaagcaga aagaacctta
2901 gccactttac aaacttgctc ataggtggag aagttcttta tacctaactt
2951 ttctttcttt atattttggt aataagctaa agggaaaata atcggtgcca
3001 gtccccttat actagataaa agaggtagag gtcctccaat acataacatc
3051 atcctcaagg cacaagaatc ataagatgaa ggcacattca acccataagc
3101 agcaactaat ggtagttcca tgattttccc atacatttcc tgtctagcag
3151 cttcattctt gcttttctcc accatactaa ctatttttgt cctgataaaa
3201 gcttctgtcc tcttgaatgt ccagtcctca ggtccaacat caacacttgt
3251 agcaacaata tttttcccgc aaaaattata cttaccactc ttgcaggctg
3301 caaaaatctg tttcctgcat tttaggatat tcaagcagtt tgtaaaagtt
3351 atctctatat ttttgttgtt gtcaaaaaaa gctttgaagc taaatccagg
3401 agtggagtct tctgtttcaa tttcaacatc tgctgtacca ccagccaaaa
3451 gttccttgat tttcttttct gtaagctgct taacgttaga catggtgttt
3501 acaaaggaaa cgtctgatat gttgtttgaa ctgattttat tagcgcctcg
3551 attgctct