Sequence of DPV Melon necrotic spot virus
Melon necrotic spot virus genes for p29, p89, p7A, p7B, p14, p42 coat protein, complete cds, isolate:NK.
ACC No: AB044292
Dated: 2005-04-14 | Length: 4046 | CRC: 479389461
!!NA_SEQUENCE 1.0 ID AB044292 standard; genomic RNA; VRL; 4046 BP. XX AC AB044292; XX SV AB044292.2 XX DT 10-JAN-2002 (Rel. 70, Created) DT 14-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Melon necrotic spot virus genes for p29, p89, p7A, p7B, p14, p42 coat DE protein, complete cds, isolate:NK. XX KW . XX OS Melon necrotic spot virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Carmovirus. XX RN [1] RP 1-4046 RA Ohshima K.; RT ; RL Submitted (05-JUN-2000) to the EMBL/GenBank/DDBJ databases. RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of RL Plant Virology; 1-banchi,Honjo-machi, Saga, Saga, 840-8502, Japan RL (E-mail:Ohshimak@cc.saga-u.ac.jp, Tel:0952-28-8730, Fax:0952-28-8709) XX RN [2] RA Ohshima K., Ando T., Motomura N., Matsuo K., Sako N.; RT "Nucleotide sequences of protein genes of two Japanese melon necrotic spot RT virus isolates"; RL Unpublished. XX RN [3] RA Ohshima K., Tsuyu A., Motomura N., Matsuo K., Sako N.; RT "Nucleotide sequences of protein genes of two Japanese melon necrotic spot RT virus isolates"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1. .4046 FT /country="Japan" FT /db_xref="taxon:11987" FT /mol_type="genomic RNA" FT /organism="Melon necrotic spot virus" FT /isolate="NK" FT CDS 93. .2468 FT /codon_start=1 FT /db_xref="GOA:Q8V992" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007095" FT /db_xref="UniProt/TrEMBL:Q8V992" FT /note="The readthrough amino acid has not been identified" FT /note="readthrough product" FT /transl_except=(pos:897. .899,aa:OTHER) FT /product="p89" FT /protein_id="BAB82513.1" FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRTPGITNSIITYGEEVVEQVKVDIDE FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVFNPDMYDISSKALLNSEILTENR FT ATLDRLKTLDGWLSHLVCHPLSTKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLIERVFFVEND FT KKDLEPAPKPLSGVFDRLTWFRRKLHNIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL FT EGLSVQRRDAYLKTFVKAEKINTTRKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRR FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSSDALKWEHSVY FT LDAFCHDSYLAELLEWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH FT DFFRSPGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEVFEQIE FT FCQMRPVYDGEKYVMVRNPLVSLSKDSYSVGPWNGVNHARKWVNAVGLCGLSLTGGIPV FT VQSYYNMMIRNTQSVNSSGILRDVSFASGFRELARLGNRKNGAISEDARFSFYLAFGIT FT PDLQRAMESDYDAHTIEWGFVPQGNPRIQPISWTLNEL" FT CDS 93. .899 FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:Q8V991" FT /product="p29" FT /protein_id="BAB82514.1" FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRTPGITNSIITYGEEVVEQVKVDIDE FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVFNPDMYDISSKALLNSEILTENR FT ATLDRLKTLDGWLSHLVCHPLSTKAWRRAIDNLCGLPDWKAFKLVN" FT CDS 2447. .2833 FT /codon_start=1 FT /db_xref="GOA:Q8V990" FT /db_xref="InterPro:IPR007982" FT /db_xref="InterPro:IPR009575" FT /db_xref="UniProt/TrEMBL:Q8V990" FT /note="The readthrough amino acid has not been identified" FT /note="readthrough product" FT /transl_except=(pos:2642. .2644,aa:OTHER) FT /product="p14" FT /protein_id="BAB82515.1" FT /translation="MDSQRTVEQTNPRGRIKERGDSGGKQKNSMGRKIANDAISESKQG FT VMGASTYIADKIKVTINFNFXCMACYRCDSSPGDYSGALLILFISFVFFYITSLSPQGN FT TYVHHFDNSSVKTQYVGISTNGDG" FT CDS 2447. .2644 FT /codon_start=1 FT /db_xref="GOA:Q8V989" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProt/TrEMBL:Q8V989" FT /product="p7A" FT /protein_id="BAB82516.1" FT /translation="MDSQRTVEQTNPRGRIKERGDSGGKQKNSMGRKIANDAISESKQG FT VMGASTYIADKIKVTINFNF" FT CDS 2648. .2833 FT /codon_start=1 FT /db_xref="InterPro:IPR009575" FT /db_xref="UniProt/TrEMBL:Q8UYH9" FT /product="p7B" FT /protein_id="BAB82517.1" FT /translation="MACYRCDSSPGDYSGALLILFISFVFFYITSLSPQGNTYVHHFDN FT SSVKTQYVGISTNGDG" FT CDS 2820. .3992 FT /codon_start=1 FT /db_xref="GOA:Q8V988" FT /db_xref="HSSP:2TBV" FT /db_xref="InterPro:IPR000937" FT /db_xref="UniProt/TrEMBL:Q8V988" FT /product="p42 coat protein" FT /protein_id="BAB82518.1" FT /translation="MAMVKRINNLPTVKLAKQALPLLTNPKLVNKAIDVVPLVVQGGQK FT LSKAAKRLLGAYGGNISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI FT ASVLPSNDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGS FT TSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSAPWAENVLVVPCDNTWRYMNDTNAV FT DRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGST FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNVTSIGSLTFTGNSKLVGNSLNVT FT SSGASALTFTLNSTGVPNSTNSSFSVGTVVALTRVRMTITRCSPETAYLA" XX SQ Sequence 4046 BP; 1030 A; 842 C; 988 G; 1186 T; 0 other; AB044292 Length: 4046 April 19, 2005 08:53 Type: N Check: 3778 .. 1 tttgttcttt ccacggatcc ccgacttctt cggttttgac agttagttag 51 ttcgtatata aggttatctc tcttaatcaa tacaggttag caatggatac 101 tggtttgaaa tttcttgttt ctggaggttt agccacctca tctgttatta 151 ggaaagtgag tgctgtgagt tcattggatt cgtcccttcc ttcatcgtct 201 atactatctg ccattcatgg gtcttggact agtgctatca gccacgattg 251 tagcaagatt gccaaggttg ccaccgtgat tggaattggt tatcttgggg 301 ttcggattgg tgccgcatgg tgtcgtcgta cccccgggat aacgaattct 351 ataattacat acggggaaga agtggttgag caagtaaagg tggatattga 401 tgaagatgct gaagaggagt ccgatactgg tgaggaaatt gtggttggca 451 cgataggtat tggcatacac actaacgtca accctgaggt tcgagctaag 501 cgcagacata gatcgaggcc attcattaag aagattgtga atttaacgaa 551 aaatcacttt ggtggatgtc ccgattcaag taaatcgaac gtcatggctg 601 ttagcaaatt tgtttatgaa caatgtaaac agcacaattg tcttccacat 651 cagacaagat tgatcatgag tgttgcggtt ccattggtgt ttaatcccga 701 catgtacgac atttccagta aagctctgtt aaacagcgag atattgacag 751 aaaacagagc tacgctggac cgcctcaaaa ctcttgacgg gtggctgtca 801 catttagtgt gccaccccct cagcacgaag gcttggaggc gggcgattga 851 caacttgtgt ggtcttcctg attggaaggc cttcaagttg gtcaactagg 901 ggtgcctaga ggaactcgct gggttctgta cttcggtacg gagggggacg 951 cacccagaca tgaccgagtt tcctcaggat cgtcccatta agacacgcaa 1001 actgtattgt ttggggggag ttggaactag cgttaagttc aatgtacaca 1051 ataactctct agctaacctt cggcgcggtc ttatagaacg cgttttcttt 1101 gttgaaaatg ataagaagga cctagagcct gcccccaaac cccttagtgg 1151 tgtgtttgac cgcttaacct ggtttcgtcg gaaactccat aacattgtgg 1201 gtactcattc cagtattagt ccaggtcaat tcttggattt ctatactggc 1251 aggaggcgta caatttatga aggtgccgtg aagtcattgg aggggttaag 1301 tgttcaaaga agggatgcct atttgaaaac gtttgttaag gcggagaaga 1351 ttaacaccac taggaagcct gacccagctc cgcgggtcat acaaccgagg 1401 aacgtaagat ataatgttga agttggtcgt tatctacgta ggtttgagca 1451 ttacctctat cgaagaattg atgaaatctg gaatggcccc actataatta 1501 aaggatacac tgtcgagcaa attgggaaaa ttgctcgtga tgcttgggac 1551 tctttcgtga gccccgtggc aatcgggttt gatatgaaga ggttcgacca 1601 acatgtatcc tccgacgctc ttaaatggga acacagtgtt taccttgatg 1651 ctttttgcca tgattcttat cttgcagaat tgttggagtg gcaattagtc 1701 aataaaggag tcgggtatgc cagtgatgga atgatcaaat ataaggttga 1751 tgggtgccgg atgagtggtg acatgaatac agctatgggt aactgtctga 1801 ttgcctgtgc tatcacacat gatttcttcc gtagtcctgg tatcagggcg 1851 cgtttgatga acaatggtga tgactgtgtc gtaatatgtg aaaaagaatg 1901 tgccgcggtg gttaaagccg acatggtaag gcactggaga caattcgggt 1951 ttcaatgcga gctcgagtgc gacgcagaag tcttcgagca aattgagttt 2001 tgtcaaatgc ggcctgtgta cgacggggaa aaatatgtga tggtgcggaa 2051 tccgctagtt agcctatcta aagattcata ctcagtcggc ccatggaatg 2101 gagtcaacca tgcacgcaag tgggtaaacg ctgtaggctt gtgtggctta 2151 tccctcactg gtggaattcc tgttgtccag agttactata atatgatgat 2201 tcgtaacact caatccgtga acagttctgg cattctccgg gatgtcagtt 2251 ttgctagtgg atttcgggag ttagcgcgat tgggtaacag gaaaaatggt 2301 gccatatcag aagacgcccg ttttagcttt tatctcgcat ttggcattac 2351 tccagattta caacgtgcca tggaaagtga ctatgatgct cataccatag 2401 agtggggttt cgtgccccag ggaaatccta gaatacagcc aatctcatgg 2451 actctcaacg aactgtagaa caaactaatc ctcggggaag aattaaagaa 2501 cgtggtgaca gcgggggaaa acagaagaac tcaatggggc gaaagatagc 2551 caatgatgct atctctgaat cgaagcaggg agttatgggt gctagcacat 2601 acattgctga caaaattaag gtgactatca actttaattt ttagtgtatg 2651 gcttgttacc gttgtgactc cagccccggg gattactctg gagctttgct 2701 tatattattt atctcatttg ttttcttcta cattacctcg cttagcccgc 2751 aaggaaatac ttacgttcac cacttcgata attcttccgt taaaacgcaa 2801 tacgttggca tctctacaaa tggcgatggt taaacgcatt aataatttac 2851 caacagtgaa gcttgctaag caggccctgc ccctgctaac gaatcctaaa 2901 cttgtgaata aggctataga tgtggttcct ttggtcgtcc aaggtggtca 2951 gaaattgtcc aaagctgcca agcggttgct tggcgcttat ggtggtaata 3001 tttcttacac tgagggcgcc aagcctggtg caatatccgc tccagttgcc 3051 attagtaggc gagtggcggg tatgaagcct aggtttgttc gatccgaagg 3101 atctgtgaag atagttcata gggagtttat tgcctctgtt cttccgtcga 3151 atgatctcac cgtgaataat ggtgatgtca atatcggtaa gtatagggtc 3201 aatcccagta ataacgcttt attcacatgg cttcagggac aagcgcaatt 3251 atatgatatg tacagattta ctcgactacg atttacctat attccaacca 3301 ccggatccac ttccacaggt cgtgtttcta ttctctggga tagagactcc 3351 caggatcccc tccctattga ccgcgccgct attagttctt atgctcatta 3401 cgctgattca gcgccttggg cagagaacgt cttagtggtt ccatgtgaca 3451 atacgtggag gtacatgaat gataccaatg cagtggaccg gaagttggtt 3501 gattttgggc agttcctttt tgctacttat tctggtgctg gtgccaccgc 3551 ccacggtgat ctctacgttg agtatgctgt tgaattcaaa gatccccagc 3601 ctattgctgg aatggtttgt atgtttgatc gcttggtctc tttctctgaa 3651 gtcggatcta caattaaagg agtcaattat attgctgatc gtgatgtgat 3701 aaccactggg ggcaatattg gtgttaacat caatattccc gggacttatc 3751 tcgtcacgat tgttcttaac gttacatcaa ttggctccct tactttcact 3801 ggtaattcta aactcgtagg caatagtctt aacgtcacca gcagtggcgc 3851 ttcagctctt acattcaccc ttaattccac tggtgtgccc aacagtacta 3901 attcttcatt ctctgtgggc accgttgttg cattgactag ggttcgtatg 3951 acgattactc gctgctctcc tgaaactgcc tacctcgcct agagatttaa 4001 ttcactatac tccaaaatcc ggtctccctt cttcctagct gttctc