Sequence of DPV Potato virus X
Potato virus X genomic RNA, complete genome, strain: os.
ACC No: AB056718
Dated: 2007-12-15 | Length: 6435 | CRC: 2016811553
ID AB056718; SV 1; linear; genomic RNA; STD; VRL; 6435 BP.
XX
AC AB056718;
XX
DT 10-JAN-2002 (Rel. 70, Created)
DT 15-DEC-2007 (Rel. 94, Last updated, Version 4)
XX
DE Potato virus X genomic RNA, complete genome, strain: os.
XX
KW .
XX
OS Potato virus X
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6435
RA Namba S., Kagiwada S., Yamaji Y., Nakabayashi H.;
RT ;
RL Submitted (07-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shigetou Namba The University of Tokyo, Graduate School of
RL Agricultural and Life Sciences, Department of Agricultural and
RL Environmental Biology, Laboratory of Plant Pathology; 1-1-1 Yayoi,
RL Bunkyo-ku, Tokyo 113-8657, Japan
XX
RN [2]
RA Kagiwada S., Yamaji Y., Nakabayashi H., Ugaki M., Namba S.;
RT "The complete nucleotide sequence of Potato virus X strain OS: the first
RT complete sequence of a Japanese isolate";
RL J. Gen. Plant Pathol. 68:94-98(2002).
XX
RN [3]
RA Kagiwada S., Yamaji Y., Komatsu K., Takahashi S., Mori T., Hirata H.,
RA Suzuki M., Ugaki M., Namba S.;
RT "A single amino acid residue of RNA-dependent RNA polymerase in the Potato
RT virus X genome determines the symptoms in Nicotiana plants";
RL Virus Res. 110:177-182(2005).
XX
DR RFAM; RF00184.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6435
FT /organism="Potato virus X"
FT /strain="os"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12183"
FT CDS 85. .4455
FT /codon_start=1
FT /transl_table=1
FT /gene="RdRp"
FT /product="RNA dependent RNA polymerase"
FT /db_xref="GOA:Q8V967"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR006025"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q8V967"
FT /protein_id="BAB83122.1"
FT /translation="MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTV
FT EAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVTFMFLKPRKLNYM
FT RRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPSYIVETFQ
FT NCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQ
FT WLKVGKIKWRDPKDGFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVR
FT TFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKS
FT SDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLFG
FT LEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPREVSDVEEMESLFSDGDLL
FT DCFTRMPSYAVNAEEDLAAIRKTPEMDVGQEVKEPAGDRNQYSNPAETFLNKLHRKHSR
FT EVKHQAVKKAKRLAEIQESMRAEGEAGSNEMSGGMGAIPSNAELPSTSDARQELILPVN
FT KPVPARWEDASLTDSSVEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALE
FT IQRDRSGTIIMPITEMVSGLEKEDFPEGTPKELARELLAMNRSPATIPLDLLRARDYGS
FT DVKNKRIGAITKTQATSWGEYLTGKIESLNERKVATCVIHGAGGSGKSHAIQKALREIG
FT KGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYIE
FT ALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD
FT LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTK
FT PKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVV
FT REQALKEYEPAEAEPIREPEPQTHMRVENEESVLEEYKEELLEKFDREIHSESHGHSNC
FT VQTENTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKA
FT MGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWV
FT TKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMS
FT AWALNNWDFSRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQI
FT FLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKHSF
FT HRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKC
FT QDSYEIDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPRLRNFL"
FT CDS 4486. .5166
FT /codon_start=1
FT /transl_table=1
FT /gene="TGB1"
FT /product="triple gene block 1"
FT /db_xref="GOA:Q8V966"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="UniProtKB/TrEMBL:Q8V966"
FT /protein_id="BAB83123.1"
FT /translation="MDILIISLKSLGYSRTSKSLDSGPLVVHAVAGAGKSTALRKLILR
FT HPTFTVHTLGVPDKVSIRTRGIQKPGPIPEGNFAILDEYTLDNTTRNSYQALFADPYQA
FT PEFSLEPHFYLETSFRVPKKVADLIASCGFDFETNSQEEGHLEITGIFKGPLLGKVIAI
FT DEEAETTLSRHSVEFVKPCQVTGLEFKVVTIVSAAPIEEIGQSTAFYNAITRSKGLTYV
FT RAGT"
FT CDS 5147. .5494
FT /codon_start=1
FT /transl_table=1
FT /gene="TGB2"
FT /product="triple gene block 2"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q77RX1"
FT /protein_id="BAB83124.1"
FT /translation="MSAQGHRLTAPVNSEKVYIVLGLSFALVSITFLLSRNSLPHVGDN
FT IHSLPHGGAYRDGTKAILYNSPNLGSRVSLHNGKNAAFAAVLLLTLLIYGSKYISQRNH
FT TCACGNNHSSH"
FT CDS 5427. .5639
FT /codon_start=1
FT /transl_table=1
FT /gene="TGB3"
FT /product="triple gene block 3"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/TrEMBL:Q85247"
FT /protein_id="BAB83125.1"
FT /translation="MEVNTYLNAIILVLVVTIIAVISTSLVRTEPCVIKITGESITVLA
FT CKLDAETIRAIADLKPLSVERLSFH"
FT CDS 5650. .6363
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:Q8V965"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:Q8V965"
FT /protein_id="BAB83126.1"
FT /translation="MSAPASTTQATGSTTSTTTKTAGVTPATTSGLFTIPDGDFFSTAR
FT AIVASNAVATNEDLSKIEAIWKDMKVPTDTMAQAAWDLVRHCADVGSSAQTEMIDTGPY
FT SNGISRARLAAAIKEVCTLRQFCMKYAPVVWNWMLTNNSPPANWQAQGFKPEHKFAAFD
FT FFNGVTNPAAIMPKEGLIRPPSEAEMNAAQTAAFVKITKARAQSNDFASLDAAVTRGRI
FT TGTTTAEAVVTLPPP"
XX
SQ Sequence 6435 BP; 1979 A; 1508 C; 1476 G; 1472 T; 0 other;
ab056718 Length: 6435 15-DEC-2007 Type: N Check: 3235 ..
1 gaaaactaaa ccatacacca ccaacacaac caaacccacc acgcccaatt
51 gttacacacc cgcttgaaaa agaaagtcta acaaatggcc aaagtgcgcg
101 aggtttatca atcctttaca gactccacca caaaaactct catccaagat
151 gaggcttata gaaatattcg tcccatcatg gaaaaacata aactagctaa
201 cccgtacgct caaacagttg aagcggctaa tgatctagag gggttcggca
251 tagccactaa tccctatagc attgaattgc atacacatgc agccgctaag
301 actatagaga ataaacttct agaggtgctt ggttccatcc taccacaaga
351 acctgttaca tttatgttcc ttaagcccag gaagctaaac tatatgagaa
401 gaaacccgcg gattaaggac attttccaca atgttgctat tgaaccaaga
451 gacgtagcaa ggtaccccaa ggaaacaata attgacaaac tcacagagat
501 cacaacggac acagcatata ttagtgacac tctgcacttc ttggatccga
551 gttacatagt ggagacattc cagaactgcc caaaattgca aacattgtat
601 gcgaccttag ttctccccgt tgaggcagcc tttaaaatgg aaagcactca
651 cccaaacata tacagcctca aatacttcgg agatggtttc cagtatatac
701 caggcaacca tggtggtgga gcataccatc atgaatttgc tcatttacaa
751 tggctcaaag tgggaaagat caagtggagg gaccccaagg atggctttct
801 cggacatctc aattacacga ctgagcaggt tgagatgcac acagtgacag
851 tgcagttgca ggaatcgttc gcggcaaacc atttgtactg catcagaaga
901 ggggacttgc tcacaccgga ggtgcgcact ttcggccaac ctgacaggta
951 tgtgattcca ccacagatct ttctcccgaa agttcacaac tgcaagaagc
1001 cgattcttaa gaaaactatg atgcagctct tcttgtatgt taggacagtc
1051 aaagtcgcaa aaaattgtga catttttgcc aaagtcagac aattaattaa
1101 atcatctgac ttggacaaat attctgccgt ggaactggtt tacctagtaa
1151 gctatatgga gttcctggct gatttacaag ctaccacctg cttctcagac
1201 acactttctg gtggcttgct aacaaagacc cttgcaccgg taagagcttg
1251 gatacaagag aaaaagatgc agctgtttgg tcttgaggac tacgcgaagt
1301 tagtcaaagc agttgatttc cacccggtgg atttctcttt caaagtggaa
1351 acttgggact tcagattcca ccccttgcaa gcgtggaaag ctttccgacc
1401 aagggaagtg tcggatgtag aggaaatgga gagtttgttc tcagatgggg
1451 acctgcttga ttgcttcaca agaatgccat cttacgcagt aaacgcagag
1501 gaagatttag ctgcaataag gaaaacgcct gagatggatg tcggccaaga
1551 agttaaagaa cctgcaggag acaggaatca atactcaaac cctgcagaaa
1601 ctttcctcaa caagctccac aggaaacaca gtagggaggt gaaacatcag
1651 gccgtaaaga aagctaaacg cctagctgaa atccaggagt ccatgagagc
1701 tgaaggtgag gccgggtcga atgagatgag cggaggcatg ggggcaatac
1751 ctagcaacgc cgaacttcct agcacgagtg atgcccgaca agaactcata
1801 ctcccagtca acaaacctgt ccctgcaagg tgggaagatg cttcattaac
1851 agattctagt gtggaagagg agcaggtgaa actccccgga aaagaagccg
1901 ttgagacagc aacacaacaa gtcatcgaag gactcccctg gaaacactgg
1951 atccctcaac taaatgctgt tggattcaag gcactggaaa ttcaaaggga
2001 tagaagtgga acaataatca tgcccatcac agaaatggtc tccgggttgg
2051 aaaaagagga cttcccggaa ggaactccaa aagagttggc acgagaattg
2101 ctcgccatga acagaagccc tgccaccatc cctttggacc tgcttagagc
2151 cagagactac ggcagtgacg tgaagaataa gagaattggt gccatcacaa
2201 agacacaagc aacaagctgg ggcgagtacc taacaggaaa gatagagagc
2251 ctgaatgaga ggaaagttgc gacttgtgtc attcatggag ctggaggctc
2301 tgggaaaagt catgccattc agaaggcatt gagagaaatt ggcaagggct
2351 cagacatcac tgtagttctg ccgaccaatg aactgcgact agattggagt
2401 aagaaggtgc ccaacactga accgtacatg ttcaagacct atgaaaaggc
2451 gttaattggg ggaacaggca gtatagtcat cttcgacgat tactcaaaac
2501 ttcctcccgg ttacatagaa gccttaatct gtttttactc caagatcaag
2551 ctagtcattc taacaggaga tagcagacag agcgtctacc atgagactgc
2601 agaggacgcc tctattaggc atttgggacc agcgacagag tacttctcaa
2651 aatactgccg atactatctc aatgctacac accgcaacaa gaaagacctt
2701 gcgaacatgc ttggtgtcta cagtgagagg acgggagtta ccgaaatcag
2751 catgagcgcc gagttcttag aaggaatccc aactttggta ccttcggatg
2801 aaaagagaag gctgtacatg ggtaccggga ggaatgacac gttcacatac
2851 gctggatgcc aggggctaac taagccgaaa gtacaaatag tgctggacca
2901 caacacccaa gtgtgtagcg cgaatgtgat gtacacggca ctttctagag
2951 ccaccgacag gattcacttc gtgaacacaa gtgcaaactc ttcagccttc
3001 tgggaaaagt tagacagcac cccttatctc aagactttcc tatcagtggt
3051 gagagaacaa gcactcaagg agtacgagcc ggcagaggca gagccaattc
3101 gagagcctga gccccagaca cacatgcgtg tcgaaaatga ggagtccgtg
3151 ctagaagagt acaaagagga actcctggag aagtttgaca gagagatcca
3201 ctctgaatcc catggccatt caaactgtgt ccaaactgaa aacacaacta
3251 ttcagttgtt ctcgcatcag caagcaaaag atgagaccct cctctgggcg
3301 accatagatg cgcggctcaa gaccagcaat caagagacaa atttccgaga
3351 attcttgagc aagaaggaca ttggggacgt tctgtttttg aactaccaaa
3401 aagctatggg tttgcccaaa gagcgtattc ctttttcaca agaggtctgg
3451 gaagcttgtg cccatgaggt acaaagtaag tacctcagta agtcgaagtg
3501 caacttgatc aatgggactg tgagacagag cccagacttt gatgaaaaca
3551 aaattatggt attcctcaag tcgcagtggg tcacgaaggt ggaaaaacta
3601 ggtctaccca agattaagcc gggccaaacc atagcagctt tctatcagca
3651 gactgtgatg ctttttggaa ctatggctag gtacatgcga tggttcagac
3701 aggcttttca gccaaaagaa gtcttcataa actgtgagac cacgccagaa
3751 gacatgtctg catgggcctt gaacaactgg gatttcagta gacctagctt
3801 ggctaatgac tacacagcct tcgaccagtc tcaggatgga gctatgttgc
3851 aatttgaggt gctcaaagct aagcaccact gcataccaga ggaaattatc
3901 caagcataca tagacattaa gaccaatgca cagattttcc taggcacatt
3951 gtcaattatg cgcctgactg gtgaaggtcc cacctttgat gcaaacactg
4001 agtgcaacat agcttacacc catacaaagt ttgacatccc ggccggaact
4051 gctcaagttt atgcaggaga cgactcagca ttggactgtg ttccagaagt
4101 gaagcatagt ttccacaggc ttgaagacaa attactcctc aagtcgaagc
4151 ctgtaatcac gcaacaaaag aaaggcagtt ggcctgagtt ttgtggttgg
4201 ctgattacac caaaaggggt aatgaaagac ccaattaagc tccatgttag
4251 cttaaaattg gccgaagcta agggtgaact caagaaatgt caagattcct
4301 atgaaattga tctgagttat gcctatgacc acaaggactc tctacatgac
4351 ctgttcgatg agaaacagtg tcaggcacat acactcactt gcaggacact
4401 aatcaagtca gggagaggca ctgtctcact tccccgcctc agaaactttc
4451 tttaaccgtt aagttacctt atagatttga ataagatgga tattctcatc
4501 attagtttga aaagtttagg ttattctagg acttctaaat ctttagactc
4551 aggaccttta gtagtacatg cagtagctgg agccggtaag tccacagccc
4601 taaggaagtt gatcctcaga cacccaacat tcaccgtgca tacactcggg
4651 gtccctgaca aggtgagtat cagaactaga ggcatacaga agccaggacc
4701 tattcctgag ggcaatttcg caatccttga tgagtatact ttggacaaca
4751 ccacaagaaa ctcataccag gcactttttg ctgaccctta tcaggcacct
4801 gagtttagcc tagagcccca cttctacttg gaaacatcat ttcgagttcc
4851 gaagaaagtg gcagatttga tagcaagttg tggtttcgat ttcgagacca
4901 actcacagga ggaagggcac ttagagatca ctggcatatt caaagggccc
4951 ctacttggga aggtgatagc cattgacgag gaggctgaga caacgctgtc
5001 caggcatagt gttgagtttg ttaagccctg ccaagtgact ggacttgagt
5051 tcaaagtagt cactattgtg tctgccgcac caatagagga aattggccag
5101 tccacagctt tctacaacgc catcaccagg tcaaagggat tgacatatgt
5151 ccgcgcaggg acatagactg accgctccgg tcaattctga aaaagtgtac
5201 atagtattag gtctatcatt tgctttagtt tcaattacct ttctgctttc
5251 tagaaatagt ttaccccacg tcggtgacaa cattcacagc ttaccacacg
5301 gaggagccta cagagacggc accaaagcaa tcttgtacaa ctccccaaat
5351 ctagggtcac gagtgagtct acacaacgga aagaacgcag catttgctgc
5401 cgttttgcta ctgactttgc tgatctatgg aagtaaatac atatctcaac
5451 gcaatcatac ttgtgcttgt ggtaacaatc atagcagtca ttagtacttc
5501 cttagtgagg actgaacctt gtgtcatcaa gattactgga gaatcaatca
5551 cagtgttggc ctgcaaatta gacgcagaaa ctatcagagc cattgccgat
5601 ctcaagccac tctccgttga acggttaagt ttccattgat actcgaaaga
5651 tgtcagcacc agctagcaca acacaggcca cggggtcaac tacctcaact
5701 accacgaaaa ctgcaggcgt aactcctgcc acaacttcag gactgtttac
5751 catcccggat ggagatttct ttagtacagc ccgtgccata gtagccagca
5801 atgcagttgc aacaaatgag gacctcagca agattgaggc tatttggaag
5851 gacatgaagg tgcctacaga cactatggca caggctgctt gggacttagt
5901 cagacactgt gctgatgtgg gctcatctgc tcaaacagaa atgatagata
5951 caggtcccta ttctaacggc atcagcagag ctagactggc tgcagcaatc
6001 aaagaggtgt gcacacttag gcaattttgc atgaagtatg ccccagtggt
6051 atggaactgg atgttgacca acaacagtcc acctgctaac tggcaagcac
6101 aaggtttcaa gcctgagcac aaattcgctg cattcgactt cttcaatgga
6151 gtcactaacc cagctgccat catgcccaaa gaggggctca tccggccacc
6201 gtctgaagct gaaatgaatg ctgcccaaac tgctgccttt gtgaagatta
6251 cgaaggccag ggcacaatcc aacgacttcg ccagcttaga tgcagctgtc
6301 actcgaggtc gtatcactgg aacaacaacc gctgaggctg ttgtcactct
6351 tccaccacca taactacgtc tacataaccg acgcctaccc cagtttcata
6401 gtattttctg gtttgattgt atgaataata taaat