Sequence of DPV Torque teno virus 28
Torque teno virus 28 DNA, complete genome, isolate: CT43F.
ACC No: AB064598
Dated: 2009-11-02 | Length: 3629 | CRC: 1525890218
ID AB064598; SV 1; linear; genomic DNA; STD; VRL; 3629 BP.
XX
AC AB064598;
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DT 16-DEC-2001 (Rel. 70, Created)
DT 02-NOV-2009 (Rel. 102, Last updated, Version 3)
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DE Torque teno virus 28 DNA, complete genome, isolate: CT43F.
XX
KW .
XX
OS Torque teno virus 28
OC Viruses; ssDNA viruses; Anelloviridae; Alphatorquevirus.
XX
RN [1]
RP 1-3629
RA Okamoto H.;
RT ;
RL Submitted (03-JUL-2001) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Okamoto Jichi Medical School, Immunology Division and
RL Division of Molecular Virology; 3311-1 Yakushiji, Minamikawachi-machi,
RL Kawachi-gun, Tochigi 329-0498, Japan
XX
RN [2]
RX DOI; 10.1007/s705-002-8301-7.
RX PUBMED; 11855633.
RA Peng Y.H., Nishizawa T., Takahashi M., Ishikawa T., Yoshikawa A.,
RA Okamoto H.;
RT "Analysis of the entire genomes of thirteen TT virus variants classifiable
RT into the fourth and fifth genetic groups, isolated from viremic infants";
RL Arch. Virol. 147(1):21-41(2002).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3629
FT /organism="Torque teno virus 28"
FT /isolate="CT43F"
FT /mol_type="genomic DNA"
FT /country="China"
FT /note="originally submitted as 'Torque teno virus'"
FT /note="synonym: TT virus"
FT /db_xref="taxon:687367"
FT CDS join(299. .600,2411. .2912)
FT /codon_start=1
FT /transl_table=1
FT /note="ORF4"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:Q8V7I3"
FT /protein_id="BAB79319.1"
FT /translation="MSWRPPAYNLAQREEHWYKAILESHSTFCGCSDVVRHFCVLASRL
FT ATNPSVIPALPAPPEQQPRPGGDTEGAPGDPGDAGAGRYAEEDLEELFAAAAKDDMRRV
FT QKTPNGNPVRGSHRKPRRRRLLFTQSTPKRAREQPVRRRDSPRRGDPKTATTQAAQPAA
FT TAAASPQRGTQTSPGRRPPTPERSPLGPPPIIIQGDPIPDLLFPSTGKKRKFSKFDWET
FT EAEIGRWLRRPMRFYPSDPPHYPWLPPKRDIPKICKVNFKINFTE"
FT CDS join(299. .600,2209. .2740)
FT /codon_start=1
FT /transl_table=1
FT /note="ORF3"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:Q8V7I2"
FT /protein_id="BAB79320.1"
FT /translation="MSWRPPAYNLAQREEHWYKAILESHSTFCGCSDVVRHFCVLASRL
FT ATNPSVIPALPAPPEQQPRPGGDTEGAPGDPGDAGAGRYAEEDLEELFAAAAKDDIPST
FT TLAKNPHTNYPTPINTLQEYKSQIRNTSAHKQSSTPSTSDVDCLARQVLKECQNTNLLM
FT TLFQQASGSKDPEWKPSTREPQKTKKKTPTIYSKHSKKSKRAASQKKRQPKKRRSKNSN
FT YSSSSTCSDSSSESSERDSNKSWETSSDSGKESTGTPAYNNSRRSNSRPAVSQYW"
FT CDS 299. .604
FT /codon_start=1
FT /transl_table=1
FT /note="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:Q8UYE7"
FT /protein_id="BAB79321.1"
FT /translation="MSWRPPAYNLAQREEHWYKAILESHSTFCGCSDVVRHFCVLASRL
FT ATNPSVIPALPAPPEQQPRPGGDTEGAPGDPGDAGAGRYAEEDLEELFAAAAKDDM"
FT CDS 487. .2691
FT /codon_start=1
FT /transl_table=1
FT /transl_except=(pos:487. .489,aa:Met)
FT /note="ACG for ATG as start codon"
FT /note="ORF1"
FT /db_xref="GOA:Q8V7I1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:Q8V7I1"
FT /protein_id="BAB79322.1"
FT /translation="MAWWRYRRRPWRPWRRRGWAVRRRRSRRTFRRRGKRRYVSRRPRR
FT RYRRRYRRGRRRRGRRRRHRQTIVLRQWQPDVMKKCFITGWLPLIICGSGNTQFNFVTH
FT EDDIPPPKASFGGNFTNLTFTLAGLYEQKLLHRNRWSKSNFDLDLARYLYTKIKLYRHP
FT TVDYIVTYNRTGPFEINELSYMLTHPLAMLLNKHHIVVPSFKTRPKGKRSKTILIKPPK
FT LMINKWYFAKDICKIGLFQIYATGLELTNPWLRSGTKSPIIGIYVLKNSVYNNNLTNLH
FT GGGHEEGRKQVFNTLMPETAGKNWQYTYTPLMSKVYHQATKTNNEKLPTPYNWKNYSEN
FT YTQVKSKWDSLAQSGYKLVKDEYNAVYTTTATYPPEYTQRNYLSHDYGIYSPYFLTPRR
FT YTREWYTAWEYVRYNPLSDKGLGNRIYAQWCSEASSSYSSTKSKCMLQDMPLYMLTYGY
FT LDYVVKCTGNKSAWTDMRVCVRCPYTEPPLTGSDSNSGFVLLSESFMNGDMPWPSNFIP
FT LKLWFKWFPMMFNQKQAVENIVSCGPFMPRDQEANSWDITIGYKSVFKWGGSPLPPQPI
FT DDPCQKSTHELPDPDKYPPRIQIADPEHLGPQTIFHTFDIRRGLFSSASLKRVSEYQPP
FT DDPFSTGVGFKRPRMETQYAGATENQEEDAYYLLKALQKEQESSQSEEETAQEEEIQKQ
FT QLLKQLNLQRQQQRVLREGLKQVLGDVLRLRKGVHWDPRL"
XX
SQ Sequence 3629 BP; 1044 A; 1043 C; 833 G; 709 T; 0 other;
ab064598 Length: 3629 02-NOV-2009 Type: N Check: 7848 ..
1 attttgtgca gcccgccaat ttctctttta aacagaccaa tcacgcacta
51 cttcgtacac ttcctggggt gtgtctaccc agcaaatata agccagaggg
101 gtgacgaatg gtagagtttt ttctgcccgt ccgcggcgag gacgcgagcg
151 aagcgagcgg ccgagcgtcc cgagggcggg tgccggaggt gagtttacac
201 accgaagtca aggggcaatt cgggctcggg actggccggg ctatgggcaa
251 ggctcttaaa aaattccccc gctctgttct ccgccaggac attaaaacat
301 gtcgtggaga ccgccggcat acaaccttgc ccagagagaa gagcactggt
351 acaaagcaat tcttgagtcg cactctactt tttgcggctg ctctgacgtt
401 gttaggcatt tctgtgtcct tgcttctcgc cttgctacaa atccttccgt
451 gatccctgcc ctaccggcac cccctgagca gcaaccacgg cctggtggag
501 atacagaagg cgcccctggc gaccctggag acgccggggc tgggcggtac
551 gcagaagaag atctagaaga acttttcgcc gccgcggcaa aagacgatat
601 gtgagtagaa ggccgcgccg ccgatacagg cgcagataca gacggggcag
651 acgtagaagg ggacgcagac gcaggcacag acagactatt gtactaagac
701 aatggcagcc ggacgttatg aaaaagtgct ttattactgg gtggctacct
751 ctaataatct gtggatctgg aaacacccag tttaactttg tgactcatga
801 ggacgacata ccacctccaa aggcctcctt tggaggaaac tttactaacc
851 tcaccttcac cctagcggga ctatatgaac aaaaactgct ccacagaaac
901 aggtggtcca agtccaactt tgacctagac ctagccagat acctctacac
951 aaaaattaaa ctatacagac accccactgt agactacata gtcacctaca
1001 acagaacagg cccattcgag ataaatgaac tcagctacat gctcacacac
1051 cctctcgcca tgctcctaaa caagcaccac atagtagttc caagctttaa
1101 aacaaggccc aaaggaaaga gatccaaaac aatacttatt aagcctccaa
1151 aactcatgat aaacaagtgg tactttgcta aagacatctg caaaataggc
1201 ctcttccaaa tctatgccac aggcctagaa ctcaccaacc catggctcag
1251 atcaggcacc aagagcccca tcataggcat atatgtcctt aaaaactctg
1301 tgtataacaa caacttaaca aacctacatg gagggggcca cgaagaaggc
1351 agaaaacaag tttttaacac tctcatgcct gaaactgcag gcaaaaactg
1401 gcaatacaca tacactcctt taatgagcaa agtataccac caggcaacca
1451 aaacaaacaa tgaaaaacta cccacacctt ataactggaa aaactacagt
1501 gaaaactata cacaagtaaa atctaagtgg gactcactag cacaatcagg
1551 atacaaacta gtaaaagatg aatacaatgc agtctataca accactgcca
1601 cataccctcc agaatacaca caaagaaact acctaagtca tgactatggc
1651 atttacagcc catacttttt aacaccgcga agatacacaa gagaatggta
1701 cacagcctgg gagtatgtaa gatacaaccc actatcagac aaaggtctag
1751 gtaacagaat ctatgcacag tggtgcagcg aagcatcctc ctcttatagc
1801 tccaccaaaa gcaaatgcat gctacaagac atgccactat acatgctaac
1851 atatggctac ctagactatg tagtaaaatg cacaggcaat aaatcagcct
1901 ggacagacat gagagtctgt gtaagatgtc catacacaga acccccacta
1951 acagggtcag acagtaactc cggctttgta ctattatcag aaagcttcat
2001 gaacggagac atgccctggc ccagcaactt cataccgttg aagttgtggt
2051 ttaagtggtt tcctatgatg tttaaccaaa aacaggcagt tgagaacata
2101 gtttcctgtg gccccttcat gcccagagat caggaagcca actcttggga
2151 cataaccata ggttacaagt cagtttttaa atgggggggt tcccctctgc
2201 ctccacagcc catcgacgac ccttgccaaa aatccacaca cgaactaccc
2251 gaccccgata aataccctcc aagaatacaa atcgcagatc cggaacacct
2301 cggcccacaa acaatcttcc acaccttcga catcagacgt ggactgttta
2351 gctcggcaag tcttaaaaga gtgtcagaat accaacctcc tgatgaccct
2401 ttttcaacag gcgtcgggtt caaaagaccc cgaatggaaa cccagtacgc
2451 gggagccaca gaaaaccaag aagaagacgc ctactattta ctcaaagcac
2501 tccaaaaaga gcaagagagc agccagtcag aagaagagac agcccaagaa
2551 gaggagatcc aaaaacagca actactcaag cagctcaacc tgcagcgaca
2601 gcagcagcga gtcctcagag agggactcaa acaagtcctg ggagacgtcc
2651 tccgactccg gaaaggagtc cactgggacc cccgcctata ataattcaag
2701 gagatccaat tccagacctg ctgtttccca gtactggtaa aaaaagaaaa
2751 ttctccaaat tcgactggga aacggaggcg gagatcgggc gctggctcag
2801 gcggcccatg cgcttctatc cctcagaccc ccctcactac ccgtggctac
2851 cccccaagcg agatatccca aaaatatgta aagtaaactt caaaataaat
2901 ttcacagagt aactactcga ggccctcctc tgttcactta gcggtgtcta
2951 cctctaaaag tcaccaagca ctccgagcga agcgaggagt gcgaccctcc
3001 tgcccggtag caacttcctc ggggtccggc gctacgcgct tcgcgctgcg
3051 ccggacgcct cggacccccg ctcgtgctga cacgctcgcg cgtgtcagac
3101 cacttcgggc tcgcgggggt cggggggctt tactaacaga ctccgagtcg
3151 ctcttggact ctgggggggc atacagcaac gaaagtgagt ggggccagac
3201 ttcgccataa ggcctttaac ttccgggtgc gtgtgggggc cgccatttta
3251 gcttcgaccg ccattttagg ccctagcggg cctccgtagg cgcgttttaa
3301 tgacgtcaag gcagccattt tgactgtgac gtcaaagtca cgtggggagg
3351 gcggcgtgta acccggaagt catcctcgtc acgtgacctg acgtcacggc
3401 cgccattttg tgctgtccgc catcttgtga cttccttccg ctttttcaaa
3451 aaaaaagagg aagtatgacg tagcggcggg ggggcggcgc gcttcgcgcg
3501 ccgcccacta gggggcgctg cgcgcccccc ccccgcgcat gcgcgggtcc
3551 cccccccggg gggggtccgc ccccccggcc cccccccgtg caaagtccac
3601 cgcgcatgcg cgaccacgcc cccgccgcc