Sequence of DPV Soybean dwarf virus
Soybean dwarf virus genomic RNA, complete genome, strain:DC, isolate:HS99-5.
ACC No: AB076038
Dated: 2009-04-24 | Length: 5708 | CRC: 91112854
ID AB076038; SV 1; linear; genomic RNA; STD; VRL; 5708 BP.
XX
AC AB076038;
XX
DT 07-JAN-2003 (Rel. 74, Created)
DT 24-APR-2009 (Rel. 100, Last updated, Version 3)
XX
DE Soybean dwarf virus genomic RNA, complete genome, strain:DC,
DE isolate:HS99-5.
XX
KW .
XX
OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5708
RA Terauchi H., Kanematsu S., Hidaka S.;
RT ;
RL Submitted (12-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL Contact:Seiji Kanematsu National Agricultural Research Center for Tohoku
RL region, Laboratory of Plant Disease Management; 4-Akahira,
RL Shimo-Kuriyagawa, Morioka, Iwate 020-0198, Japan
XX
RN [2]
RA Terauchi H., Honda K., Yamagishi N., Kanematsu S., Ishiguro K., Hidaka S.;
RT "The N-Terminal Region of the Readthrough Domain Is Closely Related to
RT Aphid Vector Specificity of Soybean dwarf virus";
RL Phytopathology 93:1560-1564(2003).
XX
FH Key Location/Qualifiers
FH
FT source 1. .5708
FT /organism="Soybean dwarf virus"
FT /strain="DS"
FT /sub_strain="severe type"
FT /isolate="HS99-5"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12049"
FT 5'UTR 1. .126
FT CDS 127. .1212
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF1"
FT /product="replicase"
FT /db_xref="GOA:Q8B6M8"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:Q8B6M8"
FT /protein_id="BAC54063.1"
FT /translation="MFNFDSLVTATARVVKDFISFCYNRARHVYYALKRWLWELQGVFA
FT AHDAFVDMCYDAMYGVEEFEWELQKQYSTAEIDVQLAEHEYERLLADGAPLGSWPQPCA
FT PQGSFRSSDDFDVAARAAVANPIVDPQPSLIKGCGDKSPSNPTRIEKFINLVQKKEVLS
FT ATEALIKHTYEEQIGESPFGKWFNTLPNRMNYIKRAAAKQAKAAKRSKSVRQMVTEVNV
FT IPDFISCCDVVQVDTGEKLPTKKDKEGNELPPEPKLKMFRRVKPEHVGDARKYICQHIR
FT NNNMRLIDGSDVSHATINRYALKFCEDLELDMTSTEMLIKYAMVMVPLPRKSDIEAAKI
FT VQSPAARQIRHELGVLNAEVF"
FT CDS <1197. .2810
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF2"
FT /product="replicase"
FT /note="This protein is translated by minus 1 (-1) ribosomal
FT frameshifting."
FT /db_xref="GOA:Q8B6M7"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q8B6M7"
FT /protein_id="BAC54064.1"
FT /translation="RRGFLEGLCSDSGFESPFSILGLPEIVVRSGAIPRKSRSTINYLS
FT QFSLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVLPYKNIPGIFSNLDYFRKSIVDK
FT VGCPRTFSPEELAATYHSGKRTLYNAAVQSLKRKAVERSDANVTAFLKMEKHLMCKKIA
FT PRLICPRNKRYNVELGRRLKFNEKKFMHAIDSTFDSPTVLSGYDSFKVGKIIANKWSKF
FT KRPVAIGVDASRFDQHVGVEALQWEHSIYNGAFNDPILKELLHWQTENKIMLFVEDKIL
FT KFKVKGHRMSGDINTSSGNKLIMCGMMHYYFKSLGVKAELCNNGDDCVIICEKKDENKF
FT SHMHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMVRKQESISKDAHSLISM
FT ASAEDVKTFMSATAQCGMILNSGVPVLDAFHKCLYKASGYKKVSQEAIERIVSFGTQDK
FT LGLRKERVEEPITMDNRLSYWESFGVDPQTQVLVERYFDNLQVHIEPRGVKRLTPLLDK
FT TLLSIASVARTSVSLPILSK"
FT CDS 3018. .3620
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF3"
FT /product="coat protein"
FT /db_xref="GOA:Q8B6M6"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q8B6M6"
FT /protein_id="BAC54065.1"
FT /translation="MVAVSNVTIQRRRNRRVARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNLSGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDTKIAGSFKITIVVLTQNPK"
FT CDS 3034. .3603
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF4"
FT /product="movement protein"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q8B6M5"
FT /protein_id="BAC54066.1"
FT /translation="MSQYNDDAIVESHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE
FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY
FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV
FT KTSLRSTTRGTETPRSQAPSRSRSLS"
FT CDS <3621. .5090
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF5"
FT /product="readthrough protein"
FT /note="This protein is translated by in-frame readthrough
FT of the ORF3 stop codon."
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8B6M4"
FT /protein_id="BAC54067.1"
FT /translation="VDGEPGPKPGPDPAPQPTPTPEPTPAKHERFIAYTGTLSTLISAR
FT QSSDSISLYSIRSQRIRYIEDENSSWTNIDAKWYSQNSVEAIPMFVYPVPEGTWSIEIS
FT CEGYQAASSTSDPHRGKCDGMIAYDDDSSKVWNVGQQNNVTITNNKADNDWKYGHPDLM
FT INGDKFDQNQVVEKDGIISFHLVTTGPNASFFLVAPAVKKTAKYNFCVSYGDWTDRDME
FT FGMVSVVLDEHLEGARSSQYVRKTLRPGHISVNRSHRLQEMPPTREDFSEEDNSSSDSN
FT TYKTDNSRMTVHIVKAGDEESYATDQTDDVEPTLLDADVMKFSGFVGARDRFTLQGAEP
FT IGPGDRTSRRFRPSATLKAAFHSGPTPDELYNAGVEQADHDFEHFVSRGKEKLHGEDPM
FT AKLEREAEDLKPDSDNEDNDYDRTASVFNPADGDPWSGIKIKPRLKDQDMRSTLSTGTL
FT KGGSLKPKKELPPRFEPAPKSVLDRIRRRQV"
FT 3'UTR 5091. .5708
XX
SQ Sequence 5708 BP; 1695 A; 1223 C; 1326 G; 1464 T; 0 other;
ab076038 Length: 5708 24-APR-2009 Type: N Check: 225 ..
1 agtaaagttg acacctttac agaagtgttc ttgctagtaa gagttatttc
51 cttgtgaagt aatacaagaa cctcctccca gcatcttcgt atcgtgtttg
101 aggaatctct agtgttattg ttagttatgt ttaacttcga tagcttagtt
151 acagccaccg ctagggtggt taaagatttt atttcttttt gctataatag
201 ggcacggcat gtttattatg ccctaaaaag atggctctgg gaactccagg
251 gtgtatttgc tgcacatgac gcctttgtcg acatgtgcta tgacgccatg
301 tatggcgttg aggagttcga atgggaactg caaaagcagt attccactgc
351 agagattgac gtgcaattag ctgagcacga atacgagcgc ctacttgccg
401 atggcgctcc actagggtca tggccacaac catgtgcgcc ccaaggctca
451 ttcaggtcgt ctgacgactt cgatgtagct gctagggctg ctgtggcaaa
501 ccctattgtg gacccacaac cctccttgat taaagggtgt ggcgataaat
551 caccttccaa tcccactagg attgagaagt tcatcaacct cgttcaaaag
601 aaggaggtac tttccgccac tgaggctcta atcaaacata catatgaaga
651 gcaaatcggt gaatcaccat tcggaaagtg gttcaacact ctgcccaata
701 gaatgaatta tataaagagg gcagcagcaa aacaagccaa ggcggctaaa
751 cgatctaaat ctgtccgcca aatggtcacc gaggtaaatg tcatccccga
801 ctttatctct tgctgtgatg ttgtccaggt ggacactggt gagaagctcc
851 ctactaagaa agataaagaa gggaatgaat tgccacctga gcctaaactt
901 aaaatgttta gaagggtgaa gcctgagcat gttggtgatg ccaggaaata
951 tatctgtcaa cacattcgca acaataatat gaggttgata gacggctctg
1001 atgtttccca tgcaaccatc aaccgatatg cgctcaagtt ttgcgaagac
1051 ttagagcttg atatgaccag cactgaaatg ctcatcaaat atgctatggt
1101 catggtccca ctccctcgaa aatctgatat cgaggctgct aaaatcgtcc
1151 aatctcctgc tgccaggcaa ataaggcatg agttgggcgt gcttaacgcc
1201 gaggtttttt agaggggctc tgctccgact ctggttttga atccccgttt
1251 tctattttgg ggttgccaga gatcgtggtg cgaagtgggg ctatccctag
1301 gaagagtcgt agtactatta attatttgag tcagtttagt ttaggtctag
1351 attaccaatg ccctaatccc agtttgcata acgcattggt agcggttgaa
1401 cgtagagtgt tcaccgttgg gaaaggaaat gaggtagtgc taccttacaa
1451 gaacatacca ggaatctttt ctaatcttga ttatttccgc aaatctattg
1501 tggataaggt tggttgccct aggacgttct cccctgaaga acttgcagcg
1551 acgtatcact ctggtaagag aacgttgtat aatgctgctg ttcaaagtct
1601 taaacgtaag gctgttgaga ggagtgacgc gaatgtgaca gctttcctta
1651 agatggagaa gcaccttatg tgtaagaaga tagcacccag gttgatatgt
1701 ccccgcaaca aaagatataa tgttgaattg ggacgtcggt tgaaattcaa
1751 tgagaagaaa ttcatgcatg caatcgactc aacttttgat tccccgactg
1801 tattaagtgg atatgacagt tttaaagttg ggaagataat agccaataaa
1851 tggtcgaaat tcaaacgacc agttgcaata ggtgttgatg caagcagatt
1901 tgatcaacat gtgggggtag aagcactcca atgggagcac tcaatctata
1951 acggtgcatt caatgatccc attctgaagg agttgctaca ctggcaaaca
2001 gagaacaaaa taatgctgtt tgttgaagat aaaatcctca agtttaaggt
2051 caaaggacac agaatgtccg gtgacattaa cacctcttct ggcaacaaat
2101 taatcatgtg tggtatgatg cactactact tcaagtcact tggagtcaaa
2151 gccgaactct gcaataacgg cgatgattgt gttatcattt gcgagaagaa
2201 agatgaaaat aagttctcac acatgcatag ctggtttaaa gactatgggt
2251 ttgacatgca gattgagact cctgtctaca agattgggca gatagagttt
2301 tgtcaaagta aaccagttaa aattaatggc tattatagaa tggtgcgcaa
2351 acaagaaagc atatccaaag acgcccattc cctcatttct atggcatcag
2401 ctgaagatgt caaaacattt atgagtgcca ccgctcaatg cgggatgatc
2451 ttgaatagtg gtgtacctgt tcttgatgct tttcacaaat gcctatacaa
2501 agcatcgggg tacaagaaag tatcgcagga agcaatcgag aggatagtct
2551 ccttcggaac gcaggacaaa ctcgggctca ggaaagagcg agttgaagaa
2601 ccaataacga tggataatag gttgagttat tgggagtcct ttggggttga
2651 cccgcagaca caggtccttg tcgaacgata ttttgacaat ctgcaggtcc
2701 atatcgaacc ccgcggcgta aagagattga cgcctttact cgataaaact
2751 ttgctttcaa ttgcgagtgt agcacgaaca tctgtgtcgc taccaatact
2801 ttcaaaatag aagcactcat aatcaccata gtagttatag tactagtagt
2851 agttagttgt ttagattacg ctagttcgta caagtaagtt gcaacggatt
2901 accgattttt atctggtttt gctatcggct ttatagctag cataccaata
2951 tcaatattgg caatttactt tgtttaccta aaaatttcaa agaatctgag
3001 aggaatcatc aacgaatatg gtcgcggtta gcaatgtcac aatacaacga
3051 cgacgcaatc gtagagtcgc acgaagcgct ccacgagttc agctcatggc
3101 tattccaacg accaccggcg caacacagcg ccgaagaaga caacgacgac
3151 gaaggagaaa taatagagga ggaggcaatc tttccggagg atcaggcaag
3201 gctcacacat tccagttttc gaaggacggc atcaatggca gttccaaggg
3251 aactatcact ttcgggccgt ctttatcaga gtgcaagcca ctctctgatg
3301 gaatactcaa ggcctaccat gaatataaga tcacgagtat cttattacag
3351 ttcatctccg aggcctcttc cacctcgtca ggctccatcg cttatgagct
3401 tgacccacac tgcaagtact ccgaaattca atcgctactc aataaattct
3451 caattacaaa gagcggttcg aaacgattcc ccaccaaggt tatcaatggc
3501 ctcgaatggc atgataccag tgaagaccag tttaaggtcc actacaaggg
3551 gaacggagac accaagatcg caggctcctt caagatcacg atcgttgtct
3601 taactcagaa tcctaaatag gtagacggag aaccgggtcc gaaaccaggt
3651 ccagacccag caccccagcc aacaccaaca cccgaaccaa cgccagccaa
3701 acacgagaga tttatcgcgt acaccggtac gttgtccacg cttattagcg
3751 cgcgacagtc ttctgacagt atctcactct actccatccg gagtcagagg
3801 attagatata tcgaagatga aaattccagt tggacaaaca tagatgcaaa
3851 atggtactcg cagaattctg ttgaggccat tccaatgttt gtttatccag
3901 tgcccgaagg cacttggtca attgaaatat cttgtgaagg ttaccaggca
3951 gcgtcaagta catcagaccc ccatcgtgga aaatgcgatg gcatgattgc
4001 ttacgacgac gattcttcaa aggtgtggaa tgttggtcag cagaataacg
4051 taaccattac caataataag gccgataatg attggaaata tggtcaccct
4101 gatctcatga tcaatggtga caaattcgat cagaatcaag tagtcgagaa
4151 agatggaatc atttcattcc atttagtaac tactggccca aacgcaagtt
4201 tctttctcgt cgctccagct gttaagaaaa cagctaaata caacttttgt
4251 gtatcatatg gagattggac ggatagagat atggagtttg gaatggtatc
4301 agtagtgctc gatgagcact tggagggagc aaggagttct cagtatgtta
4351 ggaaaacgct aagaccaggt catattagcg tcaatcgttc ccaccgattg
4401 caagaaatgc ctcccacgcg agaggatttc agtgaggaag ataatagtag
4451 tagtgatagt aatacatata aaacagacaa ttctcgcatg accgttcaca
4501 ttgtaaaagc aggtgacgag gagagttatg caacagatca aacagacgat
4551 gttgagccca cacttcttga tgctgatgtc atgaagttct ccgggtttgt
4601 tggcgctagg gacaggttta cattgcaggg tgccgaacca atcggcccag
4651 gtgacagaac ctcccgtcgt ttcagaccgt ctgctacact aaaggctgcg
4701 ttccattcgg gaccgacccc tgatgagttg tataatgctg gtgttgaaca
4751 agcggatcac gacttcgaac actttgtctc ccggggcaaa gagaagctgc
4801 atggcgaaga tccaatggcc aaactcgaaa gagaggctga ggatttgaaa
4851 cctgatagcg acaacgaaga caacgattat gatcgaaccg cttctgtgtt
4901 caacccagca gatggtgacc cttggtcggg cattaaaatt aagcctagat
4951 taaaagacca agacatgagg tccaccttga gcactggtac cttgaaagga
5001 ggttcactga aaccgaagaa agaactcccc ccaaggtttg aaccagcgcc
5051 aaagtctgtt ttagatagaa ttagacgtag gcaagtctag tcttgcacca
5101 acatagaagt agttagcgct ttccattatt atttatagga gccaaatttg
5151 gtgagtcccg atcgatggat cctggtaaac aggttcggtg aataaaaagc
5201 cggtaatctc ggggagatgt ctactcccgt cgtatcactt tcggttgcat
5251 atccagaaaa taaccctata tttaataact aaaaattaga tagtttccgc
5301 ctctcttgca aaccacatgc aagatgcgag cttgtggaga gtaccctccc
5351 ttgaataagg agggttgaaa gtttctggtt cccaaaccat tgatcaaaat
5401 tggctctgct tctggtgatt acactgccgc tgaaataaca gcgtaaacaa
5451 attgttagta gctactccgt gaaaagagag tggctagtac gccccttaga
5501 tggcgttaaa tgaaagcgta ggttttacga caccccctgt caaggacagt
5551 caaccttgcg aagtcgggag aatgcccgat agactgtggt ctagtattaa
5601 aatgactcga gggctcttcc tcgttaaaaa gggggcgatg acaggaaact
5651 gttgtcatta ggcgaaagcc tctttgttgt taaggtggcc atcaggtcca
5701 cctgcccc