Sequence of DPV Soybean dwarf virus
Soybean dwarf virus ORF3, ORF5 genes for coat protein, readthrough protein, strain:YP, isolate:IT00-1.
ACC No: AB076045
Dated: 2009-04-24 | Length: 2149 | CRC: 1722254906
ID AB076045; SV 1; linear; genomic RNA; STD; VRL; 2149 BP.
XX
AC AB076045;
XX
DT 07-JAN-2003 (Rel. 74, Created)
DT 24-APR-2009 (Rel. 100, Last updated, Version 3)
XX
DE Soybean dwarf virus ORF3, ORF5 genes for coat protein, readthrough protein,
DE strain:YP, isolate:IT00-1.
XX
KW .
XX
OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-2149
RA Terauchi H., Kanematsu S., Hidaka S.;
RT ;
RL Submitted (12-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL Contact:Seiji Kanematsu National Agricultural Research Center for Tohoku
RL region, Laboratory of Plant Disease Management; 4-Akahira,
RL Shimo-Kuriyagawa, Morioka, Iwate 020-0198, Japan
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RN [2]
RA Terauchi H., Honda K., Yamagishi N., Kanematsu S., Ishiguro K., Hidaka S.;
RT "The N-Terminal Region of the Readthrough Domain Is Closely Related to
RT Aphid Vector Specificity of Soybean dwarf virus";
RL Phytopathology 93:1560-1564(2003).
XX
DR RFAM; RF00434; BTE.
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FH Key Location/Qualifiers
FH
FT source 1. .2149
FT /organism="Soybean dwarf virus"
FT /strain="YP"
FT /isolate="IT00-1"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12049"
FT CDS <1. .254
FT /codon_start=3
FT /transl_table=1
FT /gene="ORF3"
FT /product="coat protein"
FT /db_xref="GOA:Q8B6L1"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q8B6L1"
FT /protein_id="BAC54080.1"
FT /translation="STSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGL
FT EWRDTSEDQFKIHYKGNGESKIAGSFKISINVLTQNAK"
FT CDS <255. .1814
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF5"
FT /product="readthrough protein"
FT /note="This protein is translated by in-frame readthrough
FT of the ORF3 stop codon."
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8B6L0"
FT /protein_id="BAC54081.1"
FT /translation="VDGEPGPKPGPSPTPPPAPPPEPTPAKHERFIVYTGTVSTLISAR
FT QNSDSISLYSIRDQRVRYIEDENANWTNIKAQWYSQSSVEAIPMFIYPVPQGTWSIEIS
FT CEGYQATSSTTDPHRGKSDGMIAYDDDQTKVWNVGVQNNVTISNNKADADWKYGHPNLT
FT INGERFDQNQVVEKDGTISFHLVTTGPNASFFLVGPAVKKIAKYNYCISYGAWTDRDME
FT FGLVSVVLDEHLEGARGSQYVRKTLRPGHISVNRSHRLQDSFTPVEYVSDEDSSSNSSI
FT VSNRPSTPDNDSDTQFAESLRGKLPSQTQLPPKGFLSRLSAKEKEQISSSKPSNVEKQV
FT GPLVAAYGYPSQTGVYDAAREILQAKEAAENLAELERDLKEINKLEPPDVIVQEEIPDF
FT VPPSERVFQESPEYVPPVWRNADQAVTVSSYEPPNWSRPANESGDPPKKGSLKGTLSKL
FT GGSLRSGESSLRGSLRKTQDQSDLDYKLSKLNVLQRSQYQRMLNNSGKTRARAYLDGLD
FT LN"
XX
SQ Sequence 2149 BP; 647 A; 487 C; 492 G; 523 T; 0 other;
ab076045 Length: 2149 24-APR-2009 Type: N Check: 8472 ..
1 cttccacctc gtcaggctcc atcgcttatg agcttgaccc acactgcaag
51 tactccgaaa ttcaatcgct actcaataaa ttcagtatca caaagagcgg
101 ttcgaaacgt ttcccaacca gagctatcaa cggcctcgaa tggcgtgata
151 ccagtgaaga tcaattcaag atccactaca agggtaacgg agagtccaag
201 atcgcaggct ccttcaagat ctcgatcaat gtcctaacgc agaatgctaa
251 ataggtagac ggagaaccgg ggccgaaacc aggtccgagc cccacacccc
301 caccagcacc accacctgaa ccaacacctg caaaacatga acgatttatc
351 gtgtacaccg gcacagtatc aacgcttatc agtgcccggc aaaactcaga
401 cagtatatcg ctctactcaa tcagagatca gagagtccga tatatcgagg
451 atgagaatgc aaactggacg aacatcaagg cgcagtggta ttcacagagt
501 tctgtggaag ccattcctat gtttatatat ccagttccac aaggtacatg
551 gtcgattgaa atctcgtgtg aaggttacca ggccacatct agtaccacag
601 acccccatcg agggaagtca gatggtatga ttgcttatga tgatgaccaa
651 acaaaggtgt ggaatgttgg cgtgcaaaat aatgtaacca tatccaataa
701 caaagccgat gctgattgga aatacggcca cccaaattta acaatcaacg
751 gtgaacgttt tgaccaaaat caggtagtcg agaaagatgg aacaatatcg
801 tttcatttag taactaccgg gcccaacgcg agtttctttc ttgtcggccc
851 tgctgtcaag aagattgcca agtataatta ctgtatatct tacggtgctt
901 ggactgatcg cgatatggaa tttggattgg tttctgttgt tctcgatgaa
951 cacttagagg gtgcaagagg ttctcagtat gttaggaaaa cgctaagacc
1001 aggtcatatt agcgtcaatc gctctcaccg attgcaagac agtttcacac
1051 cggtggaata tgtcagtgat gaagatagta gtagtaatag tagtatagtt
1101 agtaatcgac catcaactcc ggacaatgat agtgataccc agtttgctga
1151 atcgcttagg ggcaagcttc cgtctcagac gcagctacct cctaaagggt
1201 ttctatcacg gttaagcgct aaagagaaag aacagatttc cagttcgaaa
1251 ccttcgaatg ttgaaaaaca agttggacct ctggttgctg cttatggata
1301 cccatctcag acgggtgttt atgatgctgc aagagagata ctgcaagcca
1351 aagaagctgc agaaaacttg gcagaattag aaagggactt aaaggaaatc
1401 aacaagctag aaccgccgga cgttattgtt caggaagaaa tccctgactt
1451 tgtgccacct tcggagagag tattccagga aagtcctgag tacgtccctc
1501 cggtgtggcg gaatgccgac caggctgtga cggtctcatc ttatgagcct
1551 ccaaactgga gtcggccagc taatgagtca ggtgatccgc ctaagaaagg
1601 ctcactcaaa ggtacactct ccaagcttgg agggtcgcta aggagtggcg
1651 agtcttctct tagaggtagc ctccgcaaga cgcaagatca atctgatcta
1701 gactataaat tgtcaaaact taatgttctt caacgatccc aataccaacg
1751 gatgttgaac aactcaggta aaacgcgtgc gcgagcatat ctcgatggtc
1801 tcgatttaaa ttaatatagg tagaagtatg tttgcgcttt ccatcatacg
1851 aaattggagc caaccatggt gagttgctgt tgtgggatcc tgggaaacag
1901 gttcggtgaa caaaaagccg gtaatctcgg gcgtttgtca gacgccgccg
1951 aatcaacaca gtatgcatat ccatcaataa cccaagttac gtatgactaa
2001 aaattagagt tagtttaccg cctctcttgt aaaccacata caagacgtga
2051 gattgtggag agtattatcc cttgaataag gataattgaa agtttctggt
2101 tccaatccat tgatcaaaat tggcactgct tctggtgatt acactgccg