Sequence of DPV Soybean dwarf virus
Soybean dwarf virus ORF3, ORF5 genes for coat protein, readthrough protein, strain:YS, isolate:HD99-3.
ACC No: AB076047
Dated: 2009-04-24 | Length: 2152 | CRC: 480816086
ID AB076047; SV 1; linear; genomic RNA; STD; VRL; 2152 BP.
XX
AC AB076047;
XX
DT 07-JAN-2003 (Rel. 74, Created)
DT 24-APR-2009 (Rel. 100, Last updated, Version 3)
XX
DE Soybean dwarf virus ORF3, ORF5 genes for coat protein, readthrough protein,
DE strain:YS, isolate:HD99-3.
XX
KW .
XX
OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-2152
RA Terauchi H., Kanematsu S., Hidaka S.;
RT ;
RL Submitted (12-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL Contact:Seiji Kanematsu National Agricultural Research Center for Tohoku
RL region, Laboratory of Plant Disease Management; 4-Akahira,
RL Shimo-Kuriyagawa, Morioka, Iwate 020-0198, Japan
XX
RN [2]
RA Terauchi H., Honda K., Yamagishi N., Kanematsu S., Ishiguro K., Hidaka S.;
RT "The N-Terminal Region of the Readthrough Domain Is Closely Related to
RT Aphid Vector Specificity of Soybean dwarf virus";
RL Phytopathology 93:1560-1564(2003).
XX
DR RFAM; RF00434; BTE.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2152
FT /organism="Soybean dwarf virus"
FT /strain="YS"
FT /isolate="HD99-3"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12049"
FT CDS <1. .254
FT /codon_start=3
FT /transl_table=1
FT /gene="ORF3"
FT /product="coat protein"
FT /db_xref="GOA:Q8B6K7"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q8B6K7"
FT /protein_id="BAC54084.1"
FT /translation="STSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGL
FT EWHDTSEDQFKIHYKGNGESKIAGSFKISINVLTQNAK"
FT CDS <255. .1820
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF5"
FT /product="readthrough protein"
FT /note="This protein is translated by in-frame readthrough
FT of the ORF3 stop codon."
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8B6K6"
FT /protein_id="BAC54085.1"
FT /translation="VDGEPGPKPGPDPAPQPTPTPEPTPAKHERFIAYTGTLSTLISAR
FT QSSDSISLYSIRSQRIRYIEDENSSWTNIDAKWYSQNSVEAIPMFVYPVPEGTWSIEIS
FT CEGYQAASSTSDPHRGKCDGMIAYDDDSSKVWNVGQQNNVTITNNKADNDWKYGHPDLT
FT INGDRFDQNQVVEKDGIISFHLVTTGPNASFFLVAPAVKKTAKYNFCVSYGDWTDRDME
FT FGMVSVVLDEHLEGARSSQYVRKSPRPGHFGVNRSHRLQDSFTPVEYVSEDDSSSSSSI
FT VSNRPSTPVSDSDAQFAESLKGKLPTQSKLPPKGFLSRLSAKEKEEISKSRPSNVESQV
FT EPLVKAYGYPSQTGVYDAAREILQAKEAAENLAELERDLKEINRLEPRDVIVQEEIPDF
FT VPPSEKVVQEDNPEYTPPIWRNADQAVTVSSYEPPDWSRPAYESGDPPKKAGTLKGTLS
FT KIGGSLRSGESSLRGSLRKTRDQSDLDNKLSKLSVIQRSQYQRILNNLGKTRAREYIDG
FT LDLD"
XX
SQ Sequence 2152 BP; 653 A; 474 C; 493 G; 532 T; 0 other;
ab076047 Length: 2152 24-APR-2009 Type: N Check: 9097 ..
1 cttccacctc gtcaggctcc atcgcttatg aacttgaccc acactgcaag
51 tactccgaaa ttcaatcgct actcaataaa ttcagtatca caaagagcgg
101 ttcgaaacgt ttcccaacca gagctatcaa tggcctcgaa tggcatgata
151 ccagtgaaga tcaattcaag atccactata aagggaacgg agagtccaag
201 attgcaggct ccttcaagat ctcgatcaat gtcctaacgc agaatgctaa
251 ataggtagac ggagaaccgg gtccgaaacc aggtccagac ccagcacccc
301 aaccaacacc aacacctgaa ccaacgccag ccaaacacga gagatttatc
351 gcgtacaccg gtacgttgtc tacactcatt agtgctagac agtcttccga
401 cagtatttcc ttatattcca tccggagtca gaggatcaga tacatcgaag
451 atgaaaattc cagttggaca aacatagatg caaaatggta ctcacaaaat
501 tctgttgagg ccatcccaat gtttgtatat ccagtgcctg aaggtacttg
551 gtcaattgag atctcttgtg aaggctacca ggcagcgtct agcacttcag
601 acccgcatcg tggaaaatgc gatggcatga ttgcttacga cgacgattca
651 tctaaggtgt ggaatgttgg ccagcaaaac aatgtaacca taaccaataa
701 caaggccgat aatgattgga agtatggtca tccagatcta acgatcaatg
751 gtgacagatt cgatcaaaat caagtagtcg agaaagatgg aattatctca
801 ttccatttag taactaccgg ccctaatgca agtttctttc ttgtcgctcc
851 agctgtgaag aaaacagcta agtataactt ttgtgtttct tacggagatt
901 ggacagatag agatatggaa tttggtatgg tatcagtagt gcttgatgag
951 cacttagaag gtgcaaggag ttctcagtac gttaggaaat cgccaagacc
1001 aggtcatttt ggcgtcaatc gttctcaccg attgcaagat agtttcacac
1051 ctgtggaata tgtcagtgaa gatgatagta gtagtagtag tagtatagtt
1101 agtaatcgac catcaactcc ggttagtgat agtgatgccc aattcgcaga
1151 atcgcttaag gggaagctcc caacacaatc gaagcttcca cccaaagggt
1201 tcctatcacg gttaagtgcc aaagaaaaag aagagatttc taagtcaagg
1251 ccttcaaatg ttgaaagcca ggttgagcct cttgttaaag cttatggata
1301 cccgtctcag acaggtgttt atgatgccgc tagagagatc ctgcaagcta
1351 aagaagctgc agaaaacttg gccgaattag aaagggactt aaaggaaatc
1401 aacaggctag aaccacggga tgtaatagtt caggaagaaa tccctgactt
1451 tgtgccgccc tcggagaagg ttgttcagga agataatcct gaatacacac
1501 ctccgatttg gcgtaatgcc gaccaagctg tgacggtctc atcatatgag
1551 cctccagact ggagtcggcc agcttatgag tcaggtgacc cacctaagaa
1601 ggcaggaacg ctcaaaggaa ctctctccaa aatagggggt tctttaagga
1651 gtggtgaatc gtctcttaga ggtagcctcc gcaagacgcg agatcaatct
1701 gatctagata acaagttatc caaactcagt gttatccaga gatcccagta
1751 ccagaggatt cttaataacc tgggtaaaac gcgtgcgcga gaatatattg
1801 atggtttaga tttagattag tataatagaa gtaagtgtgc gctttccatc
1851 acattaggtc ggagccaacc ttggtgagtt gctgtcgtgg gatcctggga
1901 aacaggttcg gtgaacaaaa agccggtaat ctcgggcgtt cgtcagacgc
1951 cgtcgtatca acacagtatg catatccatc aataacccga ctccttgtga
2001 ctaaaaatta gagttagttt ccgcctctct tgtaaaccac atacaagatg
2051 cgagcttgtg gggagtacca tcccttgaat aaggatggtt gaaagtttct
2101 ggttccaatc cattgatcaa aattggcact gcttctggtg attacactgc
2151 cg