Sequence of DPV Soybean dwarf virus
Soybean dwarf virus ORF3, ORF5 genes for coat protein, readthrough protein, strain:YS, isolate:HD99-4.
ACC No: AB076048
Dated: 2009-04-24 | Length: 1967 | CRC: -1051827121
ID AB076048; SV 1; linear; genomic RNA; STD; VRL; 1967 BP.
XX
AC AB076048;
XX
DT 07-JAN-2003 (Rel. 74, Created)
DT 24-APR-2009 (Rel. 100, Last updated, Version 3)
XX
DE Soybean dwarf virus ORF3, ORF5 genes for coat protein, readthrough protein,
DE strain:YS, isolate:HD99-4.
XX
KW .
XX
OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-1967
RA Terauchi H., Kanematsu S., Hidaka S.;
RT ;
RL Submitted (12-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL Contact:Seiji Kanematsu National Agricultural Research Center for Tohoku
RL region, Laboratory of Plant Disease Management; 4-Akahira,
RL Shimo-Kuriyagawa, Morioka, Iwate 020-0198, Japan
XX
RN [2]
RA Terauchi H., Honda K., Yamagishi N., Kanematsu S., Ishiguro K., Hidaka S.;
RT "The N-Terminal Region of the Readthrough Domain Is Closely Related to
RT Aphid Vector Specificity of Soybean dwarf virus";
RL Phytopathology 93:1560-1564(2003).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1967
FT /organism="Soybean dwarf virus"
FT /strain="YS"
FT /isolate="HD99-4"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12049"
FT CDS <1. .254
FT /codon_start=3
FT /transl_table=1
FT /gene="ORF3"
FT /product="coat protein"
FT /db_xref="GOA:Q8B6K5"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q8B6K5"
FT /protein_id="BAC54086.1"
FT /translation="STSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGL
FT EWHDTSEDQFKIHYKGNGESKIAGSFKISINVLTQNAK"
FT CDS <255. .1817
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF5"
FT /product="readthrough protein"
FT /note="This protein is translated by in-frame readthrough
FT of the ORF3 stop codon."
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8B6K4"
FT /protein_id="BAC54087.1"
FT /translation="VDGEPGPKPGPDPAPQPTPTPEPTPAKHERFIAYTGTLSTLISAR
FT QSSDSISLYSIRSQRIRYIEDENSSWTNIDAKWYSQNSVEAIPMFVYPVPEGTWSIEIS
FT CEGYQAASSTSDPHRGKCDGMIAYDDDSSKVWNVGQQNNVTITNNKADNDWKYGHPDLT
FT INGDRFDQNQVVEKDGIISFHLVTTGPNASFFLVAPAVKKTAKYNFCVSYGDWTDRDME
FT FGMVSVVLDEHLEGARSSQYVRKSPRSGHVGVNRSHRLQDNFVPAEYVSDEDSSSSSIV
FT SNRPSTPDNDSDAQFAESMKGKLPSQTKLPPKGFLSRLSAKERKEISNSKPSNVEGLVG
FT PLVAAYGYPSQTGVYDAAREILQAKEAAENLAELERDLKEINKLEPQDVIVQEEIPDFV
FT PPSEKILKEDDPDYVPPIWQNADQAVLVSSYEPPDWSRPAYESGNLLKKAGILKGTLSK
FT LGGSLRSGESSLRGSLRKTQDQTDLDNKLSKLSVIQRSQYQRILNNLGKMRARAYIDGL
FT DLD"
XX
SQ Sequence 1967 BP; 599 A; 424 C; 461 G; 483 T; 0 other;
ab076048 Length: 1967 24-APR-2009 Type: N Check: 4191 ..
1 cttccacctc gtcaggctcc atcgcttatg agcttgaccc acactgcaag
51 tactccgaaa ttcaatcgct actcaataaa ttcagtatca caaagagcgg
101 ttcgaaacgt ttcccaacca gagctatcaa tggcctcgaa tggcatgata
151 ccagtgaaga tcaattcaag atccactata aggggaacgg agagtccaag
201 atcgcaggct ccttcaagat ctcgatcaat gtcttaacgc agaatgctaa
251 ataggtagac ggagaaccgg gtccgaaacc aggtccagac ccagcacccc
301 agccaacacc aacacccgaa ccaacgccag ccaaacacga gagatttatc
351 gcgtacaccg gtacgttgtc cacgcttatt agcgcgcgac agtcttctga
401 cagtatctca ctctactcca tccggagtca gaggattaga tacatcgaag
451 atgaaaattc cagttggaca aacatagatg caaaatggta ctcgcagaat
501 tctgttgagg ccattccaat gtttgtttat ccagtgcccg aaggcacttg
551 gtcaattgaa atatcttgtg aaggttacca ggcagcgtca agtacatcag
601 atccccatcg tggaaaatgc gatggcatga ttgcttacga cgacgattct
651 tcgaaggtgt ggaatgttgg tcagcagaat aacgtaacca ttaccaataa
701 taaggccgat aatgattgga aatatggtca ccctgatctc acgatcaatg
751 gtgatagatt cgatcagaat caagtagtcg agaaagatgg aatcatttca
801 ttccatttag taactactgg cccaaacgca agtttctttc tcgtcgctcc
851 agctgttaag aaaacagcta aatacaactt ttgtgtatca tatggagatt
901 ggacggatag agatatggag tttggaatgg tatcagtagt gctcgatgag
951 cacttggagg gagcaaggag ttctcagtat gttaggaaat cgccaagatc
1001 aggtcatgtt ggcgtcaatc gttctcaccg attgcaagac aatttcgtac
1051 cagcggaata tgtcagtgat gaagatagta gtagtagtag tatagttagt
1101 aatcgaccat caactccgga taatgatagt gacgctcaat ttgctgaatc
1151 tatgaaaggt aagcttccgt ctcagacgaa gctcccgcct aaagggttcc
1201 tatcacggtt aagcgcaaaa gaaagaaaag aaatctccaa ttctaaaccc
1251 tcgaatgtcg aaggtctggt tggtcctctt gttgcagctt atggataccc
1301 atctcaaacg ggtgtttatg acgcagcaag agagatactg caagctaaag
1351 aagctgcgga aaacctggca gaattagaaa gggacttaaa ggagataaac
1401 aagcttgaac cacaggatgt aattgttcag gaagaaatcc ctgactttgt
1451 gcctccatcg gagaagatat taaaggaaga tgatcctgat tatgtacctc
1501 cgatttggca gaatgccgac caggctgtat tggtctcaag ttatgagcct
1551 ccagactgga gtcggccagc ttatgagtca ggtaacctac ttaagaaggc
1601 aggaatactc aaaggtactc tctccaaatt agggggttct ttaaggagtg
1651 gtgaatcgtc tcttagaggt agcctccgca agacgcaaga tcaaactgat
1701 ctagataaca agttatccaa actcagtgtt atccagagat cccagtacca
1751 gaggattctt aataacctgg gtaaaatgcg tgcgcgagca tatattgatg
1801 gtttagattt agattagtat aatagaagta agtgtgcgct ttccatcaca
1851 ctaggtcgga gccaaccttg gtgagttgct gtcgtgggat cctgggaaac
1901 aggttcggtg aacaaaaagc cggtaatctc gggcgtttgt cagacgccgt
1951 cgtatcaaca cagtatg