Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:C42J.

ACC No: AB076410

Dated: 2003-07-07 | Length: 1086 | CRC: -350738754

                !!NA_SEQUENCE 1.0
ID   AB076410   standard; RNA; VRL; 1086 BP.
XX
AC   AB076410;
XX
SV   AB076410.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:C42J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JX53.
DR   SPTREMBL; Q8JX53; Q8JX53.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="C42J"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JX53"
FT                   /db_xref="SPTREMBL:Q8JX53"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02746.1"
FT                   /translation="MAAVTFASAITNAITNKPALTGMVQFGSFPPMPLRSTTAITIATS
FT                   VAQPKQHTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTCGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEAEEVRTKWPLHKTPSMKKRTVHRICKMND
FT                   QGVDMLIRSLVKIFKTKSANIEYIGKKSVKVDFIRKGRTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
XX
SQ   Sequence 1086 BP; 349 A; 234 C; 290 G; 213 T; 0 other;

 AB076410  Length: 1086  July 15, 2003 09:14  Type: N  Check: 1579  ..

       1  atggcagcag ttacattcgc atcagctatc accaacgcca ttaccaataa
      51  accagcactc accggaatgg tacagtttgg gagtttccca ccaatgccat
     101  tgcgatccac caccgccatc acaatcgcca cttcagtggc gcaacctaaa
     151  cagcatacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagatcg
     301  aatgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaggctagtc tgaagagaag ctcgtatgga attgctgaga
     401  acgagaaagt tgtgatgaca acttgtggcg tcagcaagat agtgcccaga
     451  agttcaaggg caatgaagca aaagcgcgca agggagaggc gtagagcgca
     501  gcaaccaatt atactaaaat gggagcctaa attgagcggg atctcaatcg
     551  gaggagggct ctctgcgagc gcaatcgaag cagaagaggt tcgcacaaag
     601  tggccgcttc acaaaacacc gtcaatgaag aagaggacgg tgcacagaat
     651  atgcaagatg aacgaccaag gagttgacat gttgatacga tccctggtta
     701  agattttcaa gactaagagt gccaacattg agtacatcgg aaagaagtcg
     751  gttaaggtcg atttcatcag aaaaggacgg acgaaattcg caagaattca
     801  agtagcacac ttactcggga agagagcaca gcgcgactta tcaactggaa
     851  tggaagaaaa ccatttcatt gacattctca gcgggtactc aggtaacaaa
     901  acaaccataa atccaggagt ggtctgtgca ggttggagtg gcatagtcgt
     951  tagaaatgga attctaaccc agaaacgaag cagaagtcca tcagaggcct
    1001  ttgtaattag aggtgagcac gaaggcaagt tgtacgatgc caggatcaaa
    1051  gtcacgagga caatgagtca caagattgtg cacttt