Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:SP824J.

ACC No: AB076415

Dated: 2003-07-07 | Length: 1086 | CRC: 868480398

                !!NA_SEQUENCE 1.0
ID   AB076415   standard; RNA; VRL; 1086 BP.
XX
AC   AB076415;
XX
SV   AB076415.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:SP824J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JX48.
DR   SPTREMBL; Q8JX48; Q8JX48.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="SP824J"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JX48"
FT                   /db_xref="SPTREMBL:Q8JX48"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02751.1"
FT                   /translation="MAAVTFATAITNTTASKSAPTGMVQFGNFPPVPLRSTTTTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRRSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKSNGISIGGRLSASAIEVEEVRTKWPLHKTPSLKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNKKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
XX
SQ   Sequence 1086 BP; 347 A; 229 C; 292 G; 218 T; 0 other;

 AB076415  Length: 1086  July 15, 2003 09:15  Type: N  Check: 6326  ..

       1  atggcagcag ttacatttgc aaccgcaatc actaacacca ccgcaagcaa
      51  atcagcaccc accggaatgg tacagtttgg gaatttccca ccagtgccat
     101  tgcgatccac caccaccacc acagtcgcca cttcagtggc gcagcctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagaccg
     301  aatgccgtgt tgaggatgca cgaagaagca aacaaggaga gagcactctt
     351  tttggactgg gaggccagtt tgaagagacg ctcgtatgga attgctgaga
     401  acgagaaagt tgtaatgaca actcgtggcg tcagcaagat agtgcccaga
     451  agttcaaggg caatgaagca aaagcgcgca agggagaggc gtagagcgca
     501  gcaaccaatt atactaaagt gggagcctaa atcgaacgga atctcaattg
     551  gaggaaggct ttctgcgagc gcgatcgaag tagaagaagt tcgcacaaag
     601  tggccgttgc acaaaacacc atcattgaag aggaagacgg tgcacaggag
     651  atgcaaaatg aatgatcaag gaattgacat gttaatgcgt tctttgatta
     701  aaatctttaa ggcgaagagt gcgaacatcg agttcattgg gaggaagtcc
     751  attaaagtgg attttgtaaa gaaagagcaa acgaagtttg ccagagtgca
     801  agtagtgcat ttgctaggaa agcgggcaca acgcgacctg ttgactggtg
     851  cagaagaaaa ccacttcatt gacaccctaa gcacctactc aggaaataag
     901  aaaatcataa acccaggagt ggtgtgcgct ggttggagtg gcattgttat
     951  cagaaacggc attttgactc agaagcagag cagaagtcct tcgcaagcct
    1001  ttgtgattcg aggagaacat gaagggaagt tgtatgacgc cagagttaag
    1051  gtcacaaagg tgatgagcca taaaatcata cactat