Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:NDJ.

ACC No: AB076419

Dated: 2003-07-07 | Length: 1086 | CRC: 1036965412

                !!NA_SEQUENCE 1.0
ID   AB076419   standard; RNA; VRL; 1086 BP.
XX
AC   AB076419;
XX
SV   AB076419.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:NDJ.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JX44.
DR   SPTREMBL; Q8JX44; Q8JX44.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NDJ"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JX44"
FT                   /db_xref="SPTREMBL:Q8JX44"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02755.1"
FT                   /translation="MAAVTFATAITNTTASRSASTGMVQFGNFPPVPLRSTTATTVATP
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKSSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKRKMVHRRCKMND
FT                   QGVDMLMRSLIKIFKAKSANIEFIGRKSVKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNKKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKILHY"
XX
SQ   Sequence 1086 BP; 342 A; 228 C; 296 G; 220 T; 0 other;

 AB076419  Length: 1086  July 15, 2003 09:14  Type: N  Check: 8799  ..

       1  atggcagcag ttacatttgc aaccgcaatc actaacacca ccgcaagcag
      51  atcagcatcc accggaatgg tacagtttgg gaacttccca ccagtaccat
     101  tgcgatccac caccgccacc acagtcgcca ctccagtggc gcagcctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagaccg
     301  aatgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaggccagtt tgaagagaag ctcgtatggt attgctgaga
     401  acgagaaagt tgtaatgaca actcgtggcg tcagcaagat agtgcccaga
     451  agttcaaggg caatgaagca aaagcgcgca agggagaggc gtagagcgca
     501  gcaaccaatt atactaaagt gggagcccaa atcgagcgga atctcaatcg
     551  gaggagggct ttctgcgagc gcaatcgaag tagaagaagt tcgcacaaag
     601  tggccgttac ataaaacacc atcaatgaag aggaagatgg tgcacagaag
     651  atgcaagatg aatgatcaag gagttgacat gttaatgcgt tctttgatta
     701  aaatctttaa ggcgaagagt gcgaacattg agttcattgg gaggaagtcc
     751  gttaaagtgg attttgtaaa gaaagagcaa acgaagtttg ccagagtgca
     801  agtagtgcat ttgctcggaa agcgggcaca acgcgacttg ttgactggtg
     851  cagaagaaaa ccacttcatt gacaccctaa gcacctattc aggaaataag
     901  aaaatcataa acccaggagt ggtgtgcgct ggttggagcg gcattgttat
     951  cagaaacggc attttgactc agaagcagag cagaagtcct tcgcaagcct
    1001  ttgtgattcg aggagaacat gaagggaagt tgtatgacgc cagagttaag
    1051  gtcacaaagg tgatgagcca taaaatctta cactat