Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:ON12J.

ACC No: AB076421

Dated: 2003-07-07 | Length: 1086 | CRC: -1139033226

                !!NA_SEQUENCE 1.0
ID   AB076421   standard; RNA; VRL; 1086 BP.
XX
AC   AB076421;
XX
SV   AB076421.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:ON12J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JX42.
DR   SPTREMBL; Q8JX42; Q8JX42.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ON12J"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JX42"
FT                   /db_xref="SPTREMBL:Q8JX42"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02757.1"
FT                   /translation="MAAVTFASAITDAITNKPALTGMVQFGSFPPMPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVVKPRPNAVL
FT                   RMYEEANKERALFLDWEASLRRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRVQQPIILKWEPKLSGISVGGGLSASAIEAEEVHTKWPLHKTPSMKKRTVHRICRMND
FT                   QGVDMLIRSLVKIFKNKSANIEYIGKKSVKVDFIRKGRTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSEYSGDKTTINPGVVCAGWSGIVVDDGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
XX
SQ   Sequence 1086 BP; 346 A; 230 C; 293 G; 217 T; 0 other;

 AB076421  Length: 1086  July 15, 2003 09:14  Type: N  Check: 5334  ..

       1  atggcagcag ttacattcgc atcagctatc accgacgcca tcaccaataa
      51  gccagcactc accggaatgg tacagtttgg gagtttccca ccaatgccat
     101  tgcgatccac caccgtcacc acagtcgcca catcagtggc gcaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgtgaa acctagacca
     301  aatgctgtat tgaggatgta cgaggaagca aacaaggaga gggcactctt
     351  tttagactgg gaggctagtt tgaggagaag ctcatatgga attgctgaga
     401  acgagaaagt tgtaatgaca actcgtggcg tcagcaagat agtgcccaga
     451  agttcaaggg caatgaagca aaagcgcgca agggagaggc gtagagtgca
     501  gcaaccaatt atactaaagt gggagcccaa attgagtgga atctcagtcg
     551  gaggagggct ctctgcgagc gcgatcgaag cagaagaggt tcacacaaag
     601  tggccgcttc acaagacacc gtcaatgaag aagaggacgg tgcacagaat
     651  atgcaggatg aacgatcaag gagttgacat gttgatacga tccctggtta
     701  agattttcaa gaataagagt gccaacattg agtacatcgg aaagaagtcg
     751  gttaaggtcg atttcatcag aaaaggacgg acgaaattcg caagaattca
     801  agtagcacac ttactcggga agagagcaca gcgcgactta tcaactggaa
     851  tggaagaaaa ccatttcatt gacattctca gcgagtactc aggtgataaa
     901  acaaccataa atccaggagt agtctgtgca ggttggagtg gcatagtcgt
     951  tgatgatgga attctaaccc agaaacgaag cagaagtcca tcagaggcct
    1001  ttgtaattag aggtgagcac gaaggcaagt tgtacgatgc caggatcaaa
    1051  gtcacgagga caatgagcca caagattgtg cacttt