Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:YuJ.

ACC No: AB076427

Dated: 2003-07-07 | Length: 1086 | CRC: -1252024941

                !!NA_SEQUENCE 1.0
ID   AB076427   standard; RNA; VRL; 1086 BP.
XX
AC   AB076427;
XX
SV   AB076427.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:YuJ.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JX36.
DR   SPTREMBL; Q8JX36; Q8JX36.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="YuJ"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JX36"
FT                   /db_xref="SPTREMBL:Q8JX36"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02763.1"
FT                   /translation="MAAVTFASAITNATINKPTSTGMVQFGNFPPAPLRSTTITTVATP
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSLAKATRQQPNVEIDVSLSEAAALEVAKPKSSAVL
FT                   RMHEEANKERALFLDWETGLKRRSHGIAENEKVVMTTRGISKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSEFSIGGGLSASAIEEEEVRAKWPLHKTPSMKKRTVHRTCKMND
FT                   QGVDMLTRSLVKIFKAKSANIEYIGKKSIKVDFIRKERTKFARIQVAHLLGRRAQRDLS
FT                   AGTEENHFIDILSGYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKITRTMSHKIVHF"
XX
SQ   Sequence 1086 BP; 347 A; 253 C; 286 G; 200 T; 0 other;

 AB076427  Length: 1086  July 15, 2003 09:15  Type: N  Check: 5470  ..

       1  atggcagcag tcacattcgc atcagcaatc accaacgcca ccatcaacaa
      51  acctacatcc accggaatgg tacaatttgg gaatttccca ccagcgccat
     101  tacgttccac caccatcacc acagtcgcca ctccagtggc gcaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagttg tcaagggtgg
     201  agcagggtcc cttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcaaa acccaagtcg
     301  agtgccgtgt tgaggatgca cgaggaagca aacaaagaga gagcactctt
     351  tttggactgg gaaaccggtc taaagagacg ctcgcacgga attgctgaga
     401  acgagaaggt cgtgatgaca actcgtggca tcagtaagat agtgcccaga
     451  agttcaaggg caatgaaaca aaagcgcgca agagagaggc gtagagcaca
     501  acaaccaatc atcctaaagt gggagcctaa attgagcgag ttctcaattg
     551  gaggagggct ctctgcgagc gcgatcgaag aagaagaagt ccgcgcgaag
     601  tggccgcttc acaagacacc gtcaatgaag aagaggacgg tgcacagaac
     651  atgcaagatg aacgaccaag gagttgacat gttgacacga tccctggtta
     701  agattttcaa ggctaagagt gccaacattg agtacatcgg gaagaagtcg
     751  atcaaggtcg atttcatcag aaaagagcgg acgaaattcg cacgaatcca
     801  agtagcacac ttactcggga ggcgagcaca gcgcgacttg tcagctggaa
     851  cggaagaaaa ccattttatt gacattctca gcgggtactc aggtaacaaa
     901  acaaccataa atccaggagt agtttgcgca ggttggagtg gcatagtcgt
     951  tagaaatgga attctaaccc aaaagcgaag cagaagtcca tcagaggcct
    1001  ttgtaatcag aggtgagcac gagggcaagt tatacgatgc caggatcaaa
    1051  atcacgagga caatgagtca caagattgtg cacttt