Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:DMJ.

ACC No: AB076429

Dated: 2003-07-07 | Length: 1086 | CRC: -1846033819

                !!NA_SEQUENCE 1.0
ID   AB076429   standard; RNA; VRL; 1086 BP.
XX
AC   AB076429;
XX
SV   AB076429.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:DMJ.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JX34.
DR   SPTREMBL; Q8JX34; Q8JX34.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="DMJ"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JX34"
FT                   /db_xref="SPTREMBL:Q8JX34"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02765.1"
FT                   /translation="MAAVTFASAITNATINKPTSTGMVQFGNFPPVPLRSTTITTVAIP
FT                   VAQLKLYTVQFGSLDPVVVKGGAGSLAKATRQQPNVEIDVSLSEVAALEVAKPKSSAVL
FT                   RMHEEANKERALFLDWETSLKRRSHGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSEFSIGGGLSASAIEEEEVRTKWPLNKTPSMKKRTVHRTCKMND
FT                   QGVDMLTRSLVKIFKAKSANIEYIGKKSIKVDFIRKERTKFARIQVAHLLGRRAQRDLS
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGIVVRGGILTQRRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTKTMSHKIVHF"
XX
SQ   Sequence 1086 BP; 348 A; 247 C; 287 G; 204 T; 0 other;

 AB076429  Length: 1086  July 15, 2003 09:14  Type: N  Check: 8843  ..

       1  atggcagcag tcacattcgc atcagcaatc accaacgcca ccatcaacaa
      51  acctacatcc accggaatgg tacaatttgg gaatttccca ccagtgccat
     101  tacgttccac caccatcacc acagtcgcca ttccagtggc gcaactcaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagttg tcaagggtgg
     201  agcagggtcc cttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagtc gcagctctgg aggttgcaaa acccaagtcg
     301  agtgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  cttggactgg gaaaccagtc taaagagacg ctcgcacgga attgctgaga
     401  acgagaaggt cgtgatgaca actcgtggcg tcagtaagat agtgcccaga
     451  agttcaaggg caatgaaaca aaagcgcgca agagagaggc gtagagcaca
     501  acaaccaatc atcctaaagt gggagcccaa attgagcgag ttctcaattg
     551  gaggagggct ctctgcgagc gcgatcgaag aagaagaagt ccgcacaaag
     601  tggccgctta acaagacacc gtcaatgaag aagaggacgg tgcacagaac
     651  atgcaagatg aatgaccaag gagttgacat gttgacacga tccctggtta
     701  agattttcaa ggctaagagt gccaacattg agtacatcgg aaagaagtcg
     751  atcaaggtcg atttcatcag aaaagagcgg acgaaattcg caagaatcca
     801  agtagcgcac ttactcggga ggcgagcaca gcgtgacttg tcaactggaa
     851  tggaagaaaa ccatttcatt gacatcctca gcgggtactc aggtaacaaa
     901  acaaccataa atccaggagt agtttgcgca ggttggagtg gcatagttgt
     951  tagaggtgga attctaaccc agagacgaag caggagtcca tcagaggcct
    1001  ttgtaattag aggtgagcac gaaggcaagt tgtatgacgc caggatcaaa
    1051  gtcacgaaaa caatgagtca caagattgtg cacttt