Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:SGD311J.

ACC No: AB076433

Dated: 2003-07-07 | Length: 1086 | CRC: -882810935

                !!NA_SEQUENCE 1.0
ID   AB076433   standard; RNA; VRL; 1086 BP.
XX
AC   AB076433;
XX
SV   AB076433.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:SGD311J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JX30.
DR   SPTREMBL; Q8JX30; Q8JX30.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="SGD311J"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JX30"
FT                   /db_xref="SPTREMBL:Q8JX30"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02769.1"
FT                   /translation="MAAVTFATAITNTTASKPALTGMVQFGNFPPVPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFIKKEQTKFARIQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSNYSGNRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKRMSHKIIHY"
XX
SQ   Sequence 1086 BP; 354 A; 230 C; 288 G; 214 T; 0 other;

 AB076433  Length: 1086  July 15, 2003 09:15  Type: N  Check: 9629  ..

       1  atggcagcag tcacatttgc aaccgcaatc actaacacca ccgcaagcaa
      51  accagcactc accggaatgg tacagtttgg gaatttccca ccagtgccat
     101  tgcgatccac caccgtcacc acagtcgcca cttcagtggc gcaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtag tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagacca
     301  aacgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaagctagtt tgaagagaag ctcatatgga attgctgaga
     401  acgagaaagt tgtgatgaca actcgtggcg tcagcaagat agtgcccaga
     451  agttcaaggg caatgaagca aaagcgcgca agggaaagac gtagagcgca
     501  acaaccaatc atactaaagt gggagcctaa attgagcgga atctcaattg
     551  gaggaggact ctccgcgagc gcgattgaag tggaagaagt tcgcacgaag
     601  tggccgcttc acaagacacc atcaatgaag aggaagacgg tgcacagaag
     651  atgcaagatg aatgatcaag gaattgacat gttaatgcgt tctttgatta
     701  aaatctttaa ggcgaagagt gcgaacattg agttcattgg gaggaagtcc
     751  attaaagtgg atttcataaa gaaagagcaa acgaagtttg ccagaataca
     801  agtagtgcat ttgctcggaa agcgagcaca acgcgacctg ttgactggtg
     851  cagaagagaa ccacttcatt gacaccctaa gcaactactc aggaaataga
     901  aaaatcataa acccaggagt ggtgtgcgct ggttggagtg gcattgttat
     951  cagaaacggc attttgactc agaagcagag cagaagtcct tcgcaagcct
    1001  ttgtgattcg aggagaacat gaagggaagt tgtatgacgc cagagttaag
    1051  gtcacaaaga ggatgagcca caaaatcata cactat