Sequence of DPV Turnip mosaic virus
Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:CP833J.
ACC No: AB076436
Dated: 2003-07-07 | Length: 1086 | CRC: -2004337290
!!NA_SEQUENCE 1.0
ID AB076436 standard; RNA; VRL; 1086 BP.
XX
AC AB076436;
XX
SV AB076436.1
XX
DT 06-JUL-2002 (Rel. 72, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:CP833J.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1086
RA Ohshima K.;
RT ;
RL Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT genetic recombination and geographical spread";
RL J. Gen. Virol. 83:1511-1521(2002).
XX
DR GOA; Q8JX27.
DR SPTREMBL; Q8JX27; Q8JX27.
XX
FH Key Location/Qualifiers
FH
FT source 1. .1086
FT /db_xref="taxon:12230"
FT /mol_type="genomic RNA"
FT /organism="Turnip mosaic virus"
FT /isolate="CP833J"
FT CDS 1. .>1086
FT /codon_start=1
FT /db_xref="GOA:Q8JX27"
FT /db_xref="SPTREMBL:Q8JX27"
FT /note="first protein"
FT /gene="P1"
FT /product="polyprotein"
FT /protein_id="BAC02772.1"
FT /translation="MAAITFAPAITNAITNKPASTGMVQFGNFPPVPLRTTIATTVATP
FT VAQPKLYTVQFGSLDPVVVKGGPRSSAKATRQQLSIAPDANLREAAALEVAKPKPNAVL
FT RMHEEANRERALFLDWETSLKRQSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT RRVQQPIVLKWEPQLSTLSIGGGPAANVIEAEEVRTKWPLHKTPSMKKKTVFKACRMSN
FT QGIDMLMRSLIKVFKAKNATIEYTAKKSINIDFVRKERTKFARIQVAHMLGRRAQRDLL
FT TGVEENHFIDILSGYSGNKRVISPGVVCAGWSGIIIRDGVLTQSQSRSPSQAFVIRGEH
FT EGKLYDARVKVTKVMSHKIVHY"
XX
SQ Sequence 1086 BP; 338 A; 255 C; 289 G; 204 T; 0 other;
AB076436 Length: 1086 July 15, 2003 09:14 Type: N Check: 7376 ..
1 atggcagcaa tcacattcgc accagcgatc accaacgcca tcaccaacaa
51 accagcatcc accggaatgg tacaatttgg gaatttccca ccagtaccat
101 tgcgaaccac catcgcaacc acagtcgcca ccccagtggc gcaacctaaa
151 ctgtacacag tacagtttgg aagtcttgac ccagtagtcg tcaaaggtgg
201 accaaggtcc tctgctaagg caacccgcca gcagcttagc atcgcaccag
251 atgctaacct cagggaagcc gcagctttgg aggttgcaaa acccaagccg
301 aatgccgtgt tgagaatgca cgaggaggca aacagagagc gagcgctctt
351 cttggactgg gaaaccagtt tgaaaaggca atcgtatggc attgctgaga
401 acgagaaagt cgtgatgaca actcgtggtg tcagcaagat agtgcccaga
451 agttcacggg cgatgaagca aaagcgcgcg agggagaggc gcagggtaca
501 acaaccgatt gtgctaaaat gggagccaca actgagcaca ctctctattg
551 gaggggggcc tgccgcaaat gtaattgagg cagaggaagt gcgcacaaag
601 tggccactac acaaaacacc gtcaatgaag aaaaagacgg tgttcaaggc
651 gtgcagaatg agcaaccaag gaattgacat gctaatgcgt tccttgatca
701 aggtcttcaa ggcgaagaac gccaccattg aatacactgc gaagaagtct
751 atcaacatag actttgttag gaaggagcga acaaagttcg ccagaatcca
801 ggtggcacat atgcttggta gaagagcgca acgtgacctg ttaactggag
851 tggaggaaaa ccactttatt gacattctca gtggttactc gggtaacaag
901 agagtcataa gcccaggagt ggtttgtgct ggctggagtg gaataatcat
951 tagagacgga gttctcactc aaagtcagag caggagtccg tcacaagcct
1001 ttgtgatcag aggcgaacat gaaggcaaat tgtatgatgc cagagtcaaa
1051 gttacgaagg tcatgagtca caaaatcgtg cactac