Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:NPL3.

ACC No: AB076471

Dated: 2003-07-07 | Length: 1086 | CRC: 2092420052

                !!NA_SEQUENCE 1.0
ID   AB076471   standard; RNA; VRL; 1086 BP.
XX
AC   AB076471;
XX
SV   AB076471.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:NPL3.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JWZ2.
DR   SPTREMBL; Q8JWZ2; Q8JWZ2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NPL3"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JWZ2"
FT                   /db_xref="SPTREMBL:Q8JWZ2"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02807.1"
FT                   /translation="MAAVTFASAITNAITNKPALTGMVQFGSFPPMPLRSTTITTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPYVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGISKIVPRNSRAMKHKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEAEEVRTKWPLHKTPSMKKRTVHRMCRMND
FT                   QGVGMLTRSLVKIFKTKSANIEYIGKKSIKIDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSEYSGNKITINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
XX
SQ   Sequence 1086 BP; 354 A; 234 C; 282 G; 216 T; 0 other;

  AB076471  Length: 1086  July 15, 2003 09:14  Type: N  Check: 930  ..

       1  atggcagcag ttacattcgc atcagctatc accaacgcca tcaccaataa
      51  accagcactc accggaatgg tacagtttgg gagcttccca ccaatgccat
     101  tgcgatccac caccatcacc acagtcgcca cttcagtggc acaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagccttac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagatcg
     301  aatgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaggctagtt tgaaaagaag ctcgtatgga atcgctgaaa
     401  acgagaaagt tgtaatgaca actcgtggca tcagcaagat agtgcccaga
     451  aattcaaggg cgatgaagca caagcgcgca agggaaaggc gtagagcgca
     501  gcaaccaatt atactaaagt gggagcccaa attgagtggg atctcaatcg
     551  gaggagggct ctccgcgagc gcaatcgaag cagaagaggt tcgcacaaag
     601  tggccacttc ataagacacc gtcaatgaag aagaggacgg tgcacagaat
     651  gtgcaggatg aatgaccaag gagttggcat gttgacacga tccctggtta
     701  agattttcaa gactaagagt gccaacattg agtacatcgg aaagaagtcg
     751  attaagatcg atttcatcag aaaagaacga acgaaattcg caagaattca
     801  agtagcacac ttactcggga agagagcaca gcgtgactta tcaactggaa
     851  tggaagaaaa ccattttatt gatattctta gcgagtactc aggtaacaaa
     901  ataaccataa atccaggagt agtttgcgca ggttggagtg gcatagtcgt
     951  tagaaatgga attctaaccc agaaacgaag cagaagtcca tcagaggcct
    1001  ttgtaattag aggtgagcac gaaggcaagt tgtacgatgc caggatcaaa
    1051  gtcacgagga caatgagtca caagatcgtg cacttt