Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:HRD.

ACC No: AB076480

Dated: 2003-07-07 | Length: 1086 | CRC: -969015833

                !!NA_SEQUENCE 1.0
ID   AB076480   standard; RNA; VRL; 1086 BP.
XX
AC   AB076480;
XX
SV   AB076480.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:HRD.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JWY3.
DR   SPTREMBL; Q8JWY3; Q8JWY3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="HRD"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JWY3"
FT                   /db_xref="SPTREMBL:Q8JWY3"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02816.1"
FT                   /translation="MAAVTFATAITNTTASRSASTGMVQFGNFPSVPLRSTVATTATTL
FT                   VVQPKLYTVQFGSLDPIVVKGKAGSSAKATCQQPTGEINASLKEAAALEVAKPKPNAVL
FT                   RMHEEMSKERALFLDWETSLTRRSYGIADNEKVIMTARGVSKIVLRSSRAMKQKRARER
FT                   RRAQQPIVLKWEPKLSEISIGRRPSANMIEAEEVRTKWPLHKTPSMKKKTVHQTCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVVRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
XX
SQ   Sequence 1086 BP; 353 A; 237 C; 279 G; 217 T; 0 other;

 AB076480  Length: 1086  July 15, 2003 09:14  Type: N  Check: 3477  ..

       1  atggcagcag ttacatttgc aaccgcaatc actaacacca ccgcaagcag
      51  atcagcatcc accgggatgg tacaatttgg gaatttccca tcagtgccgt
     101  tgcgatccac cgtcgctacc acagctacca ccctagtggt acaacccaag
     151  ctgtacacag tacagttcgg aagccttgac ccgattgtcg tcaagggtaa
     201  agcagggtcc tctgctaagg caacctgcca gcagcctacc ggtgaaataa
     251  acgctagcct caaggaagcc gcagctttgg aggttgcaaa acccaaaccg
     301  aatgccgtgt taaggatgca cgaggaaatg agcaaggaga gagcactctt
     351  cttagactgg gaaaccagtt taacaaggcg ctcatatggc attgctgaca
     401  acgagaaggt catcatgaca gctcgtggtg ttagcaaaat agtgcttagg
     451  agctcaaggg cgatgaaaca aaagcgcgca agagaaaggc gcagggcaca
     501  acaaccaatt gtgctaaaat gggagcccaa gttgagcgaa atctcaattg
     551  gaagaagacc ctccgcaaac atgattgagg cagaagaagt tcgcacgaag
     601  tggccgttgc ataaaacacc atcaatgaag aagaagacgg tgcaccaaac
     651  atgcaagatg aatgatcaag gaattgacat gttaatgcgt tctttgatta
     701  aaatctttaa ggcaaagagt gcgaacattg agttcattgg aaggaagtcc
     751  attaaagtgg attttgtaaa gaaagagcaa acgaagtttg ccagagtaca
     801  agtagtgcat ttgcttggaa agcgggcaca acgcgacctg ttgactggtg
     851  cagaagagaa ccacttcatt gacaccctaa gcacctactc aggaaatagg
     901  aaaatcataa acccaggagt ggtgtgcgct ggttggagtg gcattgttat
     951  cagaaacggc attttgaccc agaagcagag cagaagtcct tcgcaagcct
    1001  ttgtggttcg aggagaacat gaagggaagt tgtatgacgc cagagtcaag
    1051  gtcacaaagg tgatgagcca taaaatcata cactat