Sequence of DPV Turnip mosaic virus

Turnip mosaic virus CP gene for polyprotein, partial cds, isolate:Ka1J.

ACC No: AB076502

Dated: 2003-07-07 | Length: 864 | CRC: 1701910370

                !!NA_SEQUENCE 1.0
ID   AB076502   standard; RNA; VRL; 864 BP.
XX
AC   AB076502;
XX
SV   AB076502.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus CP gene for polyprotein, partial cds, isolate:Ka1J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JWW1.
DR   SPTREMBL; Q8JWW1; Q8JWW1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="Ka1J"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JWW1"
FT                   /db_xref="SPTREMBL:Q8JWW1"
FT                   /note="coat protein"
FT                   /gene="CP"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02838.1"
FT                   /translation="AGETLDAGLTDEQKQAEKEKKEREKAEKERERQKQLALKKGKNAA
FT                   QEEGERDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEQRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
XX
SQ   Sequence 864 BP; 284 A; 182 C; 234 G; 164 T; 0 other;

  AB076502  Length: 864  July 15, 2003 09:08  Type: N  Check: 6719  ..

       1  gcaggtgaga cgcttgatgc aggtttgaca gacgagcaaa agcaggcgga
      51  gaaggagaag aaggagagag agaaggcgga gaaggaacga gagcggcaga
     101  agcagttggc actcaagaaa ggcaagaatg ctgcacaaga agagggagaa
     151  cgcgacaagg aagtaaacgc tggaacctct ggaactttca gtgtacccag
     201  acttaagagt ctgacaagca agatgcgcgt gccaagatac gagcaaagag
     251  tggctctaaa cctcgatcat ctaatcctat acacgccaga gcagacggat
     301  ctatccaaca cacgttcaac gcgaaagcag tttgacacat ggtttgaagg
     351  tgtaatggct gattacgaac tgacggagga caaaatgcaa atcattctca
     401  atggtttaat ggtctggtgc attgagaacg gaacctcccc gaacataaac
     451  ggaatgtggg tgatgatgga cggcgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgatacgcg tttgatttct atgaaatgac ttctagaact ccaatacgtg
     701  cgagagaagc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aacaatttgt tcggcttgga tggaaacgtt ggtacaacgg tagagaacac
     801  ggagaggcat acgaccgaag acgttaatcg gaacatgcat aacttacttg
     851  gcgttaaggg gtta