Sequence of DPV Japanese yam mosaic virus

Japanese yam mosaic virus gene for polyprotein, partial cds, isolate:J1B.

ACC No: AB079770

Dated: 2003-07-07 | Length: 1325 | CRC: 73912571

                !!NA_SEQUENCE 1.0
ID   AB079770   standard; RNA; VRL; 1325 BP.
XX
AC   AB079770;
XX
SV   AB079770.1
XX
DT   16-AUG-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Japanese yam mosaic virus gene for polyprotein, partial cds, isolate:J1B.
XX
KW   .
XX
OS   Japanese yam mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1325
RA   Fuji S., Nakamae H., Furuya H., Naito H.;
RT   ;
RL   Submitted (12-FEB-2002) to the EMBL/GenBank/DDBJ databases.
RL   Shin-ichi Fuji, Akita Prefectural University, Faculty of Bioresource
RL   Sciences; 241-7 Kaidobata Nishi Shimoshinjo Nakano, Akita, Akita 010-0915,
RL   Japan (E-mail:sfuji@akita-pu.ac.jp, Tel:81-18-872-1640, Fax:81-18-872-1678)
XX
RN   [2]
RA   Fuji S., Nakamae H., Furuya H., Naito H.;
RT   "High diversity of the 5'-UTR, P1 and CP genomic regions of several
RT   Japanese yam mosaic virus and heterogenous population in a yam plant";
RL   Unpublished.
XX
DR   GOA; Q8JW18.
DR   SPTREMBL; Q8JW18; Q8JW18.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1325
FT                   /db_xref="taxon:79917"
FT                   /mol_type="genomic RNA"
FT                   /organism="Japanese yam mosaic virus"
FT                   /isolate="J1B"
FT   CDS             155. .>1325
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JW18"
FT                   /db_xref="SPTREMBL:Q8JW18"
FT                   /note="5'-terminal region"
FT                   /note="first protein and helper component regiion"
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /protein_id="BAC07493.1"
FT                   /translation="MAACIETFAITNLSNTSAFQLQFGTLPPVTIGTFATSHEILVVEK
FT                   EQKKVNHVKPTEPRNGVNANKAFINSVQSEYKRQCAVLDKWEEEYNKIRSKSPDSYKIT
FT                   LTKQQKKAMLKRSVERAHKKLKEQEDILERCIIGPWGPPTNAFSIASGPLPSAMEAQVK
FT                   WPLHQTRSRRIKKAPRQPVELGQEKFKKLIRELTTLMVERAFTLELCDKSTQRVSIQKQ
FT                   HKKYYLKMNTMHERGLNKARDIVMDKFAQRVLELMVARTSGNNKHSVHNIKPGNSGFVL
FT                   SKRNLHGTQSRAYGEIFIVRGNHEGKLYDARIKLSQTIRRKIIHYSDPGVKFWNGFNTA
FT                   FQKYRKQDREHTCETDLDVEECGEVAALLCLALFPCGKITCNRCVEENLL"
XX
SQ   Sequence 1325 BP; 472 A; 280 C; 278 G; 295 T; 0 other;

 AB079770  Length: 1325  July 15, 2003 09:01  Type: N  Check: 3708  ..

       1  aaaatataaa atctcaacaa gaatcaacga aaactaagac aacaaactct
      51  ttgttaacgt ttgcttctaa acactcggat tataaatcca aaccacacaa
     101  tccgcaaaga atcgtgcgtt ccggtctttg cacttcacac tcacacaaac
     151  aaccatggca gcatgcattg agacattcgc aatcacgaac ttgagcaaca
     201  catccgcgtt tcagcttcaa tttgggacac ttccacctgt aaccatcggt
     251  acatttgcaa cttcacatga aatactggta gtggaaaaag agcagaaaaa
     301  ggtaaatcat gtcaagccca ctgaaccgcg caatggtgtg aatgcaaata
     351  aggcattcat caacagtgtg caatctgaat ataaaagaca gtgcgcggtg
     401  cttgacaaat gggaagaaga gtataacaaa atccggagta agagtcctga
     451  ctcatacaaa atcacgttga ctaagcaaca gaagaaagcc atgcttaaac
     501  gcagcgtgga aagagcacac aagaaactga aggaacagga agacattctg
     551  gaaagatgca ttataggtcc gtggggccca cccacgaatg cttttagcat
     601  tgcctctggg ccactaccat cagcaatgga ggctcaagtt aagtggccac
     651  tccaccaaac tcgttcacga cgaatcaaga aagccccaag acaaccagta
     701  gaacttgggc aagagaagtt caagaagctc attagggagc ttactacact
     751  tatggtagag agggcattca cactcgaact gtgtgacaaa agcactcaga
     801  gagtgagcat tcagaaacag cacaagaaat attacttgaa aatgaacacg
     851  atgcatgaaa gaggtctcaa caaagcaaga gatatcgtga tggataaatt
     901  tgcacaacgt gtacttgaac ttatggttgc acgcacatca ggcaacaaca
     951  agcactcagt ccataatata aaacctggaa acagtggttt tgttttaagc
    1001  aagagaaatc tgcatggaac acaatcgcga gcttatggtg aaatatttat
    1051  tgttcgtggc aatcatgaag gtaagctgta tgatgcacgc atcaaattat
    1101  cacaaacaat acgcaggaag ataatacact attccgaccc aggtgtcaaa
    1151  ttctggaatg gattcaatac agctttccaa aaatatagga agcaagatcg
    1201  cgaacacaca tgcgaaacag atcttgatgt tgaggaatgt ggcgaggttg
    1251  ctgccctatt gtgtctcgct ctttttcctt gtggtaaaat aacatgcaat
    1301  aggtgtgtgg aagaaaacct attgt