Sequence of DPV Pea stem necrosis virus
Pea stem necrosis virus DNA, complete genome.
ACC No: AB086951
Dated: 2008-12-03 | Length: 4048 | CRC: 2137999852
ID AB086951; SV 1; linear; genomic RNA; STD; VRL; 4048 BP.
XX
AC AB086951;
XX
DT 02-JUL-2003 (Rel. 76, Created)
DT 03-DEC-2008 (Rel. 98, Last updated, Version 4)
XX
DE Pea stem necrosis virus DNA, complete genome.
XX
KW .
XX
OS Pea stem necrosis virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4048
RA Ikegami M.;
RT ;
RL Submitted (26-JUN-2002) to the EMBL/GenBank/DDBJ databases.
RL Contact:Masato Ikegami Graduate School of Tohoku University, Department of
RL Life Science; 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, Miyagi
RL 981-8555, Japan
XX
RN [2]
RA Suzuki S., Hase S., Takahashi T., Ikegami M.;
RT "The genome organization of Pea stem necrosis virus and its assignment to
RT the genus Carmovirus";
RL Intervirology 45:160-163(2002).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4048
FT /organism="Pea stem necrosis virus"
FT /host="Pisum sativum"
FT /mol_type="genomic RNA"
FT /country="Japan"
FT /db_xref="taxon:199361"
FT CDS 135. .2387
FT /codon_start=1
FT /transl_table=1
FT /transl_except=(pos:804. .806,aa:OTHER)
FT /gene="p84"
FT /product="p84 product"
FT /note="readthrough product"
FT /protein_id="BAC78642.2"
FT /translation="MSIRMKFGLALVAGCASVMYVAYRRRVVRGKMLPRNLQIENSRVV
FT LKVLNSQSDGVDFPEEDSVDSSGPVILIGSVEVKLPAPVTVKRKPKAKHKSMPFITKLI
FT NAAKVHFDGVPKPTESNHMAVTRFIKDYCKEHGVDDNQTRRVCAIAGPLILSPDRTDIM
FT SRAFLYGPELSKQRAEYAAAASTISWFDAIVAAPLSCRAWRRAYLALMGYPDSVGYQMV
FT KXGCLEQLAGVCTKVHRGSHPDLVERAYGGRPKLRKMMRLGGLGTGAQFGVHNNSLRNL
FT RRGLIERVFFVEDASKKLVPAPKPLSGVFEELNYFRSRLHAIVGLHSRVSEDAFLSFYS
FT GRRRTIYEAAVKSLSELPVQRQDSFLKTFVKAEKINFTVKPDPAPRVIQPRNTRYNVEV
FT GRYLRRYEHYLYRGIDKIFGGPTIIKGYTVEQIGGIVEEAWNRFDSPVAIGFDMKRFDQ
FT HVSVPALEWEHSCYLKSYSNDAHLKTLLSWQLVNKGVGFASDGSIKYKVNGCRMSGDMN
FT TSMGNCLLACAITHAFIRQNKIKARLLNNGDDCVLIFERECAAVVKAGLVRHWRRFGFQ
FT CELEGDADIIEHVEFCQMQPVLSQSENSNYIMVRNPHVSLSKDLCCIGPWNTIVHAKKW
FT IQAVGQCGMSLCGGLPLLQAYYGAFIRNSTGVDTSKILLDTSFASGFRELAKLGKRQQG
FT EVPEETRFSFYLAFGILPSVQVALEQDFNNHVINWEFLPQGSQPSPPISCLLQKLK"
FT CDS 135. .806
FT /codon_start=1
FT /transl_table=1
FT /gene="p25"
FT /product="p25 product"
FT /protein_id="BAC78643.1"
FT /translation="MSIRMKFGLALVAGCASVMYVAYRRRVVRGKMLPRNLQIENSRVV
FT LKVLNSQSDGVDFPEEDSVDSSGPVILIGSVEVKLPAPVTVKRKPKAKHKSMPFITKLI
FT NAAKVHFDGVPKPTESNHMAVTRFIKDYCKEHGVDDNQTRRVCAIAGPLILSPDRTDIM
FT SRAFLYGPELSKQRAEYAAAASTISWFDAIVAAPLSCRAWRRAYLALMGYPDSVGYQMV
FT K"
FT CDS 2363. .2554
FT /codon_start=1
FT /transl_table=1
FT /gene="p7"
FT /product="p7 product"
FT /protein_id="BAC78644.1"
FT /translation="MSSPEIKVNLKERSRSVESKERTGKQSMGRKVANDAISAKNQGMM
FT GASVYYADEIVVNINFNF"
FT CDS 2554. .2727
FT /codon_start=1
FT /transl_table=1
FT /gene="p6"
FT /product="p6 product"
FT /protein_id="BAC78645.1"
FT /translation="MACCHDAPRDTLVPFLAIIICILLILISFLGQQERSYHHIDNSSI
FT KTQYVGISTNGK"
FT CDS 2730. .3785
FT /codon_start=1
FT /transl_table=1
FT /gene="p38"
FT /product="coat protein"
FT /protein_id="BAC78646.1"
FT /translation="MGNLPNNSDDFWVNKVRGWWRRASRESYSSCGCCDRCPWKAPCYH
FT SRNSNTVVTHREYVTDVSNSSGVFVNNSSGSSSVFRINPSNTRVFNWLSSIAGSYDSYK
FT FTRVRFTYVPYAGSNTPGRLYLGWDADSQDVIQPDRASLANFSPTSEDSVWTDSYLVIP
FT VDREWRFVDDTNISSRKLVDLGQLVLATWGGVDNTVCGEVYVEYSVELRQPQPPSGFVQ
FT VGRVDVPGILTFTGPAFVPASDLSISDTSFSFNLNTAGQYALSIDLQATTSGTLTVAGN
FT CTLLGVVKSQFASGVGIYMCIVRSTGGPNSAASISIGTLTGLSRVQFFLSRGTTSAGIR
FT VTCISSERHLS"
XX
SQ Sequence 4048 BP; 987 A; 886 C; 1019 G; 1156 T; 0 other;
ab086951 Length: 4048 03-DEC-2008 Type: N Check: 1013 ..
1 ggggataatt atagttggtt tccccttttg ttttcggaca acggtctcgg
51 caagcttcgg tattggcgga gagaaacgta atctcgtaca actaacttcc
101 aaactagcca tttggattta tctcttcttc ccttatgtct attcggatga
151 agtttggctt agcccttgtg gccggttgtg cctcagttat gtatgtggct
201 taccgacgca gggtagttcg tgggaaaatg ttgcccagaa atctgcaaat
251 tgaaaactcg cgggtggtgt tgaaggtgtt gaattctcag tctgatggag
301 tagacttccc tgaagaggat tcggtggatt cctcaggtcc tgtgattctc
351 ataggatctg ttgaagttaa gctgccggcc cctgttacag tgaagcgtaa
401 acctaaagct aaacacaaga gcatgccttt tatcaccaag cttattaatg
451 ccgccaaggt gcattttgat ggagtgccca aacctaccga gagtaaccac
501 atggctgtca ctcgtttcat taaggactac tgtaaagaac atggagtcga
551 tgataaccag acgcgtcgtg tgtgtgctat cgctggacct cttatcttgt
601 caccagatcg cactgacatt atgtcccgcg cgttcctcta tggaccggag
651 ttgtccaaac aacgggctga gtatgccgct gccgcgtcaa ccatttcttg
701 gtttgatgcg atcgtggccg cgcctctctc ttgtcgggct tggcgccggg
751 catatttagc acttatgggg taccctgatt cagtggggta ccaaatggta
801 aaataggggt gccttgagca gctcgccggg gtgtgtacta aggtacacag
851 gggctcccac ccggatttgg tcgagcgtgc ttatggaggt cgccccaagt
901 tgcgcaaaat gatgcggttg ggtggtttag gaactggcgc acagttcggt
951 gttcacaata attcccttcg aaatctgagg cggggactta ttgagcgggt
1001 cttcttcgta gaagatgctt ctaagaagct tgtacccgct ccaaaaccac
1051 tctcaggtgt ctttgaagag cttaactatt ttcgatcacg gcttcatgct
1101 attgttggtt tgcactcccg ggtatcagag gatgctttct tatccttcta
1151 ctcaggccgg cgccgcacta tttatgaagc tgctgtgaaa tcattgtccg
1201 agctccctgt tcaaagacaa gattctttcc ttaaaacatt cgtgaaggct
1251 gaaaagatca attttactgt taaacctgat ccagccccac gtgttataca
1301 acctcggaac actaggtata atgtagaggt tggtagatac ctacgacgtt
1351 atgaacatta tctttatcgg ggtatagaca agatatttgg tgggcccaca
1401 atcattaagg gctacactgt ggaacaaata ggtggtatcg ttgaggaagc
1451 atggaaccga ttcgacagcc cggttgctat cgggtttgat atgaagcggt
1501 ttgaccagca tgtgagtgtt cctgctcttg agtgggagca ctcatgttac
1551 ctcaaatctt attccaatga tgctcacctt aagacattac tgtcttggca
1601 attagttaac aaaggtgtgg gatttgctag tgatggttct attaaataca
1651 aggtcaatgg ttgtcggatg agtggtgata tgaacacttc tatgggcaat
1701 tgcttgctcg cttgcgctat aacacatgcg tttattcgtc agaataagat
1751 taaggctaga ctgctcaaca atggtgatga ttgtgtactc attttcgaac
1801 gtgaatgtgc cgcggtggta aaagccggct tagtaaggca ctggcgaaga
1851 ttcggatttc aatgcgaact cgaaggtgat gctgatatta tcgaacatgt
1901 tgagttttgt caaatgcagc ccgttttgtc ccagtctgag aatagcaatt
1951 atattatggt gcgtaacccg catgtcagtt tgtctaagga cttgtgttgt
2001 atcggccctt ggaacactat tgtccatgct aagaaatgga tccaagcagt
2051 ggggcagtgt ggtatgtcac tatgtggcgg attacccttg ctccaggcct
2101 attacggggc ctttatccgt aattccaccg gagttgacac tagtaagatc
2151 ttgcttgata catcttttgc tagtggcttt cgtgaacttg ccaagcttgg
2201 taagagacaa cagggggagg tgcctgaaga aacacggttt tcgttttacc
2251 tggcgtttgg gattttgccc agtgtgcagg tagcgcttga acaagacttc
2301 aacaaccatg ttattaattg ggaatttctc ccccagggat cccagccaag
2351 tccaccaata tcatgtcttc tccagaaatt aaagtgaatt tgaaggaacg
2401 ttctcgatct gttgagtcaa aggagcgaac gggaaaacag tctatgggca
2451 gaaaggtggc caatgatgcc atctccgcta agaatcaagg tatgatgggg
2501 gccagtgtgt actacgctga tgaaattgtg gttaatatta acttcaactt
2551 ttaatggcgt gttgtcacga cgcccccagg gataccttag tgccattcct
2601 agcaattatc atctgcattc tgttaatact tattagcttc ttgggccaac
2651 aagaaagatc gtatcatcac atagataata gctctattaa aactcagtac
2701 gtaggcatct caactaatgg aaagtaagaa tgggaaacct tccaaacaac
2751 agcgacgact tttgggtaaa caaggtaagg ggttggtggc gacgtgcgag
2801 cagggaaagt tacagctcct gtggctgttg cgatcgctgt ccgtggaaag
2851 cgccctgcta tcactcccgc aacagtaata ccgtcgtcac tcacagagaa
2901 tacgttaccg atgtctccaa ctcctcaggc gtatttgtta acaattccag
2951 tggtagttct tcagtatttc ggattaaccc gtcaaacact cgagtgttta
3001 actggttgtc tagcattgcc ggatcatatg attcttataa gttcacacgg
3051 gtacgattta cctatgtacc ttacgccggt tctaatactc ctggaagact
3101 ctaccttgga tgggatgctg attcacaaga tgttattcag ccagatagag
3151 catccttagc aaattttagc cctacttcgg aagattcggt gtggacagac
3201 tcgtacctag tgataccagt ggatcgtgag tggcggtttg tggatgacac
3251 aaatatctcc tcccgtaaac tagtggatct gggacaacta gttctagcca
3301 cctggggcgg tgtggataat acagtatgtg gcgaagtgta tgttgagtac
3351 tcagttgagt tgcgtcaacc ccagcctcct tctggatttg tccaggtagg
3401 gcgggtcgac gttccgggta ttctcacttt cactggacct gcttttgtgc
3451 cagcctcaga tttgtcaatc tctgatacta gtttctcatt taatcttaat
3501 accgctggac agtacgctct tagtatcgac ttgcaagcta ccacatctgg
3551 tacattgact gtagctggga attgcaccct tttgggtgta gttaagtcac
3601 agttcgctag tggtgtagga atatacatgt gtatagtcag atccactggt
3651 ggaccaaatt ccgcggctag catctctatc ggaacgctga ctggcttgtc
3701 gcgagtccaa tttttcttgt cccgtggtac tacctccgca ggaattcgcg
3751 tgacctgcat aagctctgag aggcatctca gttaacaata tgcacgagct
3801 gtcttgtaac acagcaatgg agtaagtgta ctctggtagc aatgggtggg
3851 gtcgatttcc tacgtctagc tttggccggc tagcgtctct cgtagtgggg
3901 aaataactca ttgagaccag ctcagaacgc tgacattgtc tgtgtttgga
3951 tagagggctt ggggaaaact ccgtaaggag gggcgcccga gagcctagta
4001 acaccaaatt tataaactag gggggaccgt taaggtctcc cccgcccc