Sequence of DPV Pea stem necrosis virus
Pea stem necrosis virus DNA, complete genome.
ACC No: AB086951
Dated: 2008-12-03 | Length: 4048 | CRC: 2137999852
ID AB086951; SV 1; linear; genomic RNA; STD; VRL; 4048 BP. XX AC AB086951; XX DT 02-JUL-2003 (Rel. 76, Created) DT 03-DEC-2008 (Rel. 98, Last updated, Version 4) XX DE Pea stem necrosis virus DNA, complete genome. XX KW . XX OS Pea stem necrosis virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Carmovirus. XX RN [1] RP 1-4048 RA Ikegami M.; RT ; RL Submitted (26-JUN-2002) to the EMBL/GenBank/DDBJ databases. RL Contact:Masato Ikegami Graduate School of Tohoku University, Department of RL Life Science; 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, Miyagi RL 981-8555, Japan XX RN [2] RA Suzuki S., Hase S., Takahashi T., Ikegami M.; RT "The genome organization of Pea stem necrosis virus and its assignment to RT the genus Carmovirus"; RL Intervirology 45:160-163(2002). XX FH Key Location/Qualifiers FH FT source 1. .4048 FT /organism="Pea stem necrosis virus" FT /host="Pisum sativum" FT /mol_type="genomic RNA" FT /country="Japan" FT /db_xref="taxon:199361" FT CDS 135. .2387 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:804. .806,aa:OTHER) FT /gene="p84" FT /product="p84 product" FT /note="readthrough product" FT /protein_id="BAC78642.2" FT /translation="MSIRMKFGLALVAGCASVMYVAYRRRVVRGKMLPRNLQIENSRVV FT LKVLNSQSDGVDFPEEDSVDSSGPVILIGSVEVKLPAPVTVKRKPKAKHKSMPFITKLI FT NAAKVHFDGVPKPTESNHMAVTRFIKDYCKEHGVDDNQTRRVCAIAGPLILSPDRTDIM FT SRAFLYGPELSKQRAEYAAAASTISWFDAIVAAPLSCRAWRRAYLALMGYPDSVGYQMV FT KXGCLEQLAGVCTKVHRGSHPDLVERAYGGRPKLRKMMRLGGLGTGAQFGVHNNSLRNL FT RRGLIERVFFVEDASKKLVPAPKPLSGVFEELNYFRSRLHAIVGLHSRVSEDAFLSFYS FT GRRRTIYEAAVKSLSELPVQRQDSFLKTFVKAEKINFTVKPDPAPRVIQPRNTRYNVEV FT GRYLRRYEHYLYRGIDKIFGGPTIIKGYTVEQIGGIVEEAWNRFDSPVAIGFDMKRFDQ FT HVSVPALEWEHSCYLKSYSNDAHLKTLLSWQLVNKGVGFASDGSIKYKVNGCRMSGDMN FT TSMGNCLLACAITHAFIRQNKIKARLLNNGDDCVLIFERECAAVVKAGLVRHWRRFGFQ FT CELEGDADIIEHVEFCQMQPVLSQSENSNYIMVRNPHVSLSKDLCCIGPWNTIVHAKKW FT IQAVGQCGMSLCGGLPLLQAYYGAFIRNSTGVDTSKILLDTSFASGFRELAKLGKRQQG FT EVPEETRFSFYLAFGILPSVQVALEQDFNNHVINWEFLPQGSQPSPPISCLLQKLK" FT CDS 135. .806 FT /codon_start=1 FT /transl_table=1 FT /gene="p25" FT /product="p25 product" FT /protein_id="BAC78643.1" FT /translation="MSIRMKFGLALVAGCASVMYVAYRRRVVRGKMLPRNLQIENSRVV FT LKVLNSQSDGVDFPEEDSVDSSGPVILIGSVEVKLPAPVTVKRKPKAKHKSMPFITKLI FT NAAKVHFDGVPKPTESNHMAVTRFIKDYCKEHGVDDNQTRRVCAIAGPLILSPDRTDIM FT SRAFLYGPELSKQRAEYAAAASTISWFDAIVAAPLSCRAWRRAYLALMGYPDSVGYQMV FT K" FT CDS 2363. .2554 FT /codon_start=1 FT /transl_table=1 FT /gene="p7" FT /product="p7 product" FT /protein_id="BAC78644.1" FT /translation="MSSPEIKVNLKERSRSVESKERTGKQSMGRKVANDAISAKNQGMM FT GASVYYADEIVVNINFNF" FT CDS 2554. .2727 FT /codon_start=1 FT /transl_table=1 FT /gene="p6" FT /product="p6 product" FT /protein_id="BAC78645.1" FT /translation="MACCHDAPRDTLVPFLAIIICILLILISFLGQQERSYHHIDNSSI FT KTQYVGISTNGK" FT CDS 2730. .3785 FT /codon_start=1 FT /transl_table=1 FT /gene="p38" FT /product="coat protein" FT /protein_id="BAC78646.1" FT /translation="MGNLPNNSDDFWVNKVRGWWRRASRESYSSCGCCDRCPWKAPCYH FT SRNSNTVVTHREYVTDVSNSSGVFVNNSSGSSSVFRINPSNTRVFNWLSSIAGSYDSYK FT FTRVRFTYVPYAGSNTPGRLYLGWDADSQDVIQPDRASLANFSPTSEDSVWTDSYLVIP FT VDREWRFVDDTNISSRKLVDLGQLVLATWGGVDNTVCGEVYVEYSVELRQPQPPSGFVQ FT VGRVDVPGILTFTGPAFVPASDLSISDTSFSFNLNTAGQYALSIDLQATTSGTLTVAGN FT CTLLGVVKSQFASGVGIYMCIVRSTGGPNSAASISIGTLTGLSRVQFFLSRGTTSAGIR FT VTCISSERHLS" XX SQ Sequence 4048 BP; 987 A; 886 C; 1019 G; 1156 T; 0 other; ab086951 Length: 4048 03-DEC-2008 Type: N Check: 1013 .. 1 ggggataatt atagttggtt tccccttttg ttttcggaca acggtctcgg 51 caagcttcgg tattggcgga gagaaacgta atctcgtaca actaacttcc 101 aaactagcca tttggattta tctcttcttc ccttatgtct attcggatga 151 agtttggctt agcccttgtg gccggttgtg cctcagttat gtatgtggct 201 taccgacgca gggtagttcg tgggaaaatg ttgcccagaa atctgcaaat 251 tgaaaactcg cgggtggtgt tgaaggtgtt gaattctcag tctgatggag 301 tagacttccc tgaagaggat tcggtggatt cctcaggtcc tgtgattctc 351 ataggatctg ttgaagttaa gctgccggcc cctgttacag tgaagcgtaa 401 acctaaagct aaacacaaga gcatgccttt tatcaccaag cttattaatg 451 ccgccaaggt gcattttgat ggagtgccca aacctaccga gagtaaccac 501 atggctgtca ctcgtttcat taaggactac tgtaaagaac atggagtcga 551 tgataaccag acgcgtcgtg tgtgtgctat cgctggacct cttatcttgt 601 caccagatcg cactgacatt atgtcccgcg cgttcctcta tggaccggag 651 ttgtccaaac aacgggctga gtatgccgct gccgcgtcaa ccatttcttg 701 gtttgatgcg atcgtggccg cgcctctctc ttgtcgggct tggcgccggg 751 catatttagc acttatgggg taccctgatt cagtggggta ccaaatggta 801 aaataggggt gccttgagca gctcgccggg gtgtgtacta aggtacacag 851 gggctcccac ccggatttgg tcgagcgtgc ttatggaggt cgccccaagt 901 tgcgcaaaat gatgcggttg ggtggtttag gaactggcgc acagttcggt 951 gttcacaata attcccttcg aaatctgagg cggggactta ttgagcgggt 1001 cttcttcgta gaagatgctt ctaagaagct tgtacccgct ccaaaaccac 1051 tctcaggtgt ctttgaagag cttaactatt ttcgatcacg gcttcatgct 1101 attgttggtt tgcactcccg ggtatcagag gatgctttct tatccttcta 1151 ctcaggccgg cgccgcacta tttatgaagc tgctgtgaaa tcattgtccg 1201 agctccctgt tcaaagacaa gattctttcc ttaaaacatt cgtgaaggct 1251 gaaaagatca attttactgt taaacctgat ccagccccac gtgttataca 1301 acctcggaac actaggtata atgtagaggt tggtagatac ctacgacgtt 1351 atgaacatta tctttatcgg ggtatagaca agatatttgg tgggcccaca 1401 atcattaagg gctacactgt ggaacaaata ggtggtatcg ttgaggaagc 1451 atggaaccga ttcgacagcc cggttgctat cgggtttgat atgaagcggt 1501 ttgaccagca tgtgagtgtt cctgctcttg agtgggagca ctcatgttac 1551 ctcaaatctt attccaatga tgctcacctt aagacattac tgtcttggca 1601 attagttaac aaaggtgtgg gatttgctag tgatggttct attaaataca 1651 aggtcaatgg ttgtcggatg agtggtgata tgaacacttc tatgggcaat 1701 tgcttgctcg cttgcgctat aacacatgcg tttattcgtc agaataagat 1751 taaggctaga ctgctcaaca atggtgatga ttgtgtactc attttcgaac 1801 gtgaatgtgc cgcggtggta aaagccggct tagtaaggca ctggcgaaga 1851 ttcggatttc aatgcgaact cgaaggtgat gctgatatta tcgaacatgt 1901 tgagttttgt caaatgcagc ccgttttgtc ccagtctgag aatagcaatt 1951 atattatggt gcgtaacccg catgtcagtt tgtctaagga cttgtgttgt 2001 atcggccctt ggaacactat tgtccatgct aagaaatgga tccaagcagt 2051 ggggcagtgt ggtatgtcac tatgtggcgg attacccttg ctccaggcct 2101 attacggggc ctttatccgt aattccaccg gagttgacac tagtaagatc 2151 ttgcttgata catcttttgc tagtggcttt cgtgaacttg ccaagcttgg 2201 taagagacaa cagggggagg tgcctgaaga aacacggttt tcgttttacc 2251 tggcgtttgg gattttgccc agtgtgcagg tagcgcttga acaagacttc 2301 aacaaccatg ttattaattg ggaatttctc ccccagggat cccagccaag 2351 tccaccaata tcatgtcttc tccagaaatt aaagtgaatt tgaaggaacg 2401 ttctcgatct gttgagtcaa aggagcgaac gggaaaacag tctatgggca 2451 gaaaggtggc caatgatgcc atctccgcta agaatcaagg tatgatgggg 2501 gccagtgtgt actacgctga tgaaattgtg gttaatatta acttcaactt 2551 ttaatggcgt gttgtcacga cgcccccagg gataccttag tgccattcct 2601 agcaattatc atctgcattc tgttaatact tattagcttc ttgggccaac 2651 aagaaagatc gtatcatcac atagataata gctctattaa aactcagtac 2701 gtaggcatct caactaatgg aaagtaagaa tgggaaacct tccaaacaac 2751 agcgacgact tttgggtaaa caaggtaagg ggttggtggc gacgtgcgag 2801 cagggaaagt tacagctcct gtggctgttg cgatcgctgt ccgtggaaag 2851 cgccctgcta tcactcccgc aacagtaata ccgtcgtcac tcacagagaa 2901 tacgttaccg atgtctccaa ctcctcaggc gtatttgtta acaattccag 2951 tggtagttct tcagtatttc ggattaaccc gtcaaacact cgagtgttta 3001 actggttgtc tagcattgcc ggatcatatg attcttataa gttcacacgg 3051 gtacgattta cctatgtacc ttacgccggt tctaatactc ctggaagact 3101 ctaccttgga tgggatgctg attcacaaga tgttattcag ccagatagag 3151 catccttagc aaattttagc cctacttcgg aagattcggt gtggacagac 3201 tcgtacctag tgataccagt ggatcgtgag tggcggtttg tggatgacac 3251 aaatatctcc tcccgtaaac tagtggatct gggacaacta gttctagcca 3301 cctggggcgg tgtggataat acagtatgtg gcgaagtgta tgttgagtac 3351 tcagttgagt tgcgtcaacc ccagcctcct tctggatttg tccaggtagg 3401 gcgggtcgac gttccgggta ttctcacttt cactggacct gcttttgtgc 3451 cagcctcaga tttgtcaatc tctgatacta gtttctcatt taatcttaat 3501 accgctggac agtacgctct tagtatcgac ttgcaagcta ccacatctgg 3551 tacattgact gtagctggga attgcaccct tttgggtgta gttaagtcac 3601 agttcgctag tggtgtagga atatacatgt gtatagtcag atccactggt 3651 ggaccaaatt ccgcggctag catctctatc ggaacgctga ctggcttgtc 3701 gcgagtccaa tttttcttgt cccgtggtac tacctccgca ggaattcgcg 3751 tgacctgcat aagctctgag aggcatctca gttaacaata tgcacgagct 3801 gtcttgtaac acagcaatgg agtaagtgta ctctggtagc aatgggtggg 3851 gtcgatttcc tacgtctagc tttggccggc tagcgtctct cgtagtgggg 3901 aaataactca ttgagaccag ctcagaacgc tgacattgtc tgtgtttgga 3951 tagagggctt ggggaaaact ccgtaaggag gggcgcccga gagcctagta 4001 acaccaaatt tataaactag gggggaccgt taaggtctcc cccgcccc