Sequence of DPV Pea stem necrosis virus

Pea stem necrosis virus DNA, complete genome.

ACC No: AB086951

Dated: 2008-12-03 | Length: 4048 | CRC: 2137999852

                
ID   AB086951; SV 1; linear; genomic RNA; STD; VRL; 4048 BP.
XX
AC   AB086951;
XX
DT   02-JUL-2003 (Rel. 76, Created)
DT   03-DEC-2008 (Rel. 98, Last updated, Version 4)
XX
DE   Pea stem necrosis virus DNA, complete genome.
XX
KW   .
XX
OS   Pea stem necrosis virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC   Carmovirus.
XX
RN   [1]
RP   1-4048
RA   Ikegami M.;
RT   ;
RL   Submitted (26-JUN-2002) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Masato Ikegami Graduate School of Tohoku University, Department of
RL   Life Science; 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, Miyagi
RL   981-8555, Japan
XX
RN   [2]
RA   Suzuki S., Hase S., Takahashi T., Ikegami M.;
RT   "The genome organization of Pea stem necrosis virus and its assignment to
RT   the genus Carmovirus";
RL   Intervirology 45:160-163(2002).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4048
FT                   /organism="Pea stem necrosis virus"
FT                   /host="Pisum sativum"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan"
FT                   /db_xref="taxon:199361"
FT   CDS             135. .2387
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /transl_except=(pos:804. .806,aa:OTHER)
FT                   /gene="p84"
FT                   /product="p84 product"
FT                   /note="readthrough product"
FT                   /protein_id="BAC78642.2"
FT                   /translation="MSIRMKFGLALVAGCASVMYVAYRRRVVRGKMLPRNLQIENSRVV
FT                   LKVLNSQSDGVDFPEEDSVDSSGPVILIGSVEVKLPAPVTVKRKPKAKHKSMPFITKLI
FT                   NAAKVHFDGVPKPTESNHMAVTRFIKDYCKEHGVDDNQTRRVCAIAGPLILSPDRTDIM
FT                   SRAFLYGPELSKQRAEYAAAASTISWFDAIVAAPLSCRAWRRAYLALMGYPDSVGYQMV
FT                   KXGCLEQLAGVCTKVHRGSHPDLVERAYGGRPKLRKMMRLGGLGTGAQFGVHNNSLRNL
FT                   RRGLIERVFFVEDASKKLVPAPKPLSGVFEELNYFRSRLHAIVGLHSRVSEDAFLSFYS
FT                   GRRRTIYEAAVKSLSELPVQRQDSFLKTFVKAEKINFTVKPDPAPRVIQPRNTRYNVEV
FT                   GRYLRRYEHYLYRGIDKIFGGPTIIKGYTVEQIGGIVEEAWNRFDSPVAIGFDMKRFDQ
FT                   HVSVPALEWEHSCYLKSYSNDAHLKTLLSWQLVNKGVGFASDGSIKYKVNGCRMSGDMN
FT                   TSMGNCLLACAITHAFIRQNKIKARLLNNGDDCVLIFERECAAVVKAGLVRHWRRFGFQ
FT                   CELEGDADIIEHVEFCQMQPVLSQSENSNYIMVRNPHVSLSKDLCCIGPWNTIVHAKKW
FT                   IQAVGQCGMSLCGGLPLLQAYYGAFIRNSTGVDTSKILLDTSFASGFRELAKLGKRQQG
FT                   EVPEETRFSFYLAFGILPSVQVALEQDFNNHVINWEFLPQGSQPSPPISCLLQKLK"
FT   CDS             135. .806
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="p25"
FT                   /product="p25 product"
FT                   /protein_id="BAC78643.1"
FT                   /translation="MSIRMKFGLALVAGCASVMYVAYRRRVVRGKMLPRNLQIENSRVV
FT                   LKVLNSQSDGVDFPEEDSVDSSGPVILIGSVEVKLPAPVTVKRKPKAKHKSMPFITKLI
FT                   NAAKVHFDGVPKPTESNHMAVTRFIKDYCKEHGVDDNQTRRVCAIAGPLILSPDRTDIM
FT                   SRAFLYGPELSKQRAEYAAAASTISWFDAIVAAPLSCRAWRRAYLALMGYPDSVGYQMV
FT                   K"
FT   CDS             2363. .2554
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="p7"
FT                   /product="p7 product"
FT                   /protein_id="BAC78644.1"
FT                   /translation="MSSPEIKVNLKERSRSVESKERTGKQSMGRKVANDAISAKNQGMM
FT                   GASVYYADEIVVNINFNF"
FT   CDS             2554. .2727
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="p6"
FT                   /product="p6 product"
FT                   /protein_id="BAC78645.1"
FT                   /translation="MACCHDAPRDTLVPFLAIIICILLILISFLGQQERSYHHIDNSSI
FT                   KTQYVGISTNGK"
FT   CDS             2730. .3785
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="p38"
FT                   /product="coat protein"
FT                   /protein_id="BAC78646.1"
FT                   /translation="MGNLPNNSDDFWVNKVRGWWRRASRESYSSCGCCDRCPWKAPCYH
FT                   SRNSNTVVTHREYVTDVSNSSGVFVNNSSGSSSVFRINPSNTRVFNWLSSIAGSYDSYK
FT                   FTRVRFTYVPYAGSNTPGRLYLGWDADSQDVIQPDRASLANFSPTSEDSVWTDSYLVIP
FT                   VDREWRFVDDTNISSRKLVDLGQLVLATWGGVDNTVCGEVYVEYSVELRQPQPPSGFVQ
FT                   VGRVDVPGILTFTGPAFVPASDLSISDTSFSFNLNTAGQYALSIDLQATTSGTLTVAGN
FT                   CTLLGVVKSQFASGVGIYMCIVRSTGGPNSAASISIGTLTGLSRVQFFLSRGTTSAGIR
FT                   VTCISSERHLS"
XX
SQ   Sequence 4048 BP; 987 A; 886 C; 1019 G; 1156 T; 0 other;

ab086951 Length: 4048  03-DEC-2008  Type: N  Check: 1013  ..

       1  ggggataatt atagttggtt tccccttttg ttttcggaca acggtctcgg
      51  caagcttcgg tattggcgga gagaaacgta atctcgtaca actaacttcc
     101  aaactagcca tttggattta tctcttcttc ccttatgtct attcggatga
     151  agtttggctt agcccttgtg gccggttgtg cctcagttat gtatgtggct
     201  taccgacgca gggtagttcg tgggaaaatg ttgcccagaa atctgcaaat
     251  tgaaaactcg cgggtggtgt tgaaggtgtt gaattctcag tctgatggag
     301  tagacttccc tgaagaggat tcggtggatt cctcaggtcc tgtgattctc
     351  ataggatctg ttgaagttaa gctgccggcc cctgttacag tgaagcgtaa
     401  acctaaagct aaacacaaga gcatgccttt tatcaccaag cttattaatg
     451  ccgccaaggt gcattttgat ggagtgccca aacctaccga gagtaaccac
     501  atggctgtca ctcgtttcat taaggactac tgtaaagaac atggagtcga
     551  tgataaccag acgcgtcgtg tgtgtgctat cgctggacct cttatcttgt
     601  caccagatcg cactgacatt atgtcccgcg cgttcctcta tggaccggag
     651  ttgtccaaac aacgggctga gtatgccgct gccgcgtcaa ccatttcttg
     701  gtttgatgcg atcgtggccg cgcctctctc ttgtcgggct tggcgccggg
     751  catatttagc acttatgggg taccctgatt cagtggggta ccaaatggta
     801  aaataggggt gccttgagca gctcgccggg gtgtgtacta aggtacacag
     851  gggctcccac ccggatttgg tcgagcgtgc ttatggaggt cgccccaagt
     901  tgcgcaaaat gatgcggttg ggtggtttag gaactggcgc acagttcggt
     951  gttcacaata attcccttcg aaatctgagg cggggactta ttgagcgggt
    1001  cttcttcgta gaagatgctt ctaagaagct tgtacccgct ccaaaaccac
    1051  tctcaggtgt ctttgaagag cttaactatt ttcgatcacg gcttcatgct
    1101  attgttggtt tgcactcccg ggtatcagag gatgctttct tatccttcta
    1151  ctcaggccgg cgccgcacta tttatgaagc tgctgtgaaa tcattgtccg
    1201  agctccctgt tcaaagacaa gattctttcc ttaaaacatt cgtgaaggct
    1251  gaaaagatca attttactgt taaacctgat ccagccccac gtgttataca
    1301  acctcggaac actaggtata atgtagaggt tggtagatac ctacgacgtt
    1351  atgaacatta tctttatcgg ggtatagaca agatatttgg tgggcccaca
    1401  atcattaagg gctacactgt ggaacaaata ggtggtatcg ttgaggaagc
    1451  atggaaccga ttcgacagcc cggttgctat cgggtttgat atgaagcggt
    1501  ttgaccagca tgtgagtgtt cctgctcttg agtgggagca ctcatgttac
    1551  ctcaaatctt attccaatga tgctcacctt aagacattac tgtcttggca
    1601  attagttaac aaaggtgtgg gatttgctag tgatggttct attaaataca
    1651  aggtcaatgg ttgtcggatg agtggtgata tgaacacttc tatgggcaat
    1701  tgcttgctcg cttgcgctat aacacatgcg tttattcgtc agaataagat
    1751  taaggctaga ctgctcaaca atggtgatga ttgtgtactc attttcgaac
    1801  gtgaatgtgc cgcggtggta aaagccggct tagtaaggca ctggcgaaga
    1851  ttcggatttc aatgcgaact cgaaggtgat gctgatatta tcgaacatgt
    1901  tgagttttgt caaatgcagc ccgttttgtc ccagtctgag aatagcaatt
    1951  atattatggt gcgtaacccg catgtcagtt tgtctaagga cttgtgttgt
    2001  atcggccctt ggaacactat tgtccatgct aagaaatgga tccaagcagt
    2051  ggggcagtgt ggtatgtcac tatgtggcgg attacccttg ctccaggcct
    2101  attacggggc ctttatccgt aattccaccg gagttgacac tagtaagatc
    2151  ttgcttgata catcttttgc tagtggcttt cgtgaacttg ccaagcttgg
    2201  taagagacaa cagggggagg tgcctgaaga aacacggttt tcgttttacc
    2251  tggcgtttgg gattttgccc agtgtgcagg tagcgcttga acaagacttc
    2301  aacaaccatg ttattaattg ggaatttctc ccccagggat cccagccaag
    2351  tccaccaata tcatgtcttc tccagaaatt aaagtgaatt tgaaggaacg
    2401  ttctcgatct gttgagtcaa aggagcgaac gggaaaacag tctatgggca
    2451  gaaaggtggc caatgatgcc atctccgcta agaatcaagg tatgatgggg
    2501  gccagtgtgt actacgctga tgaaattgtg gttaatatta acttcaactt
    2551  ttaatggcgt gttgtcacga cgcccccagg gataccttag tgccattcct
    2601  agcaattatc atctgcattc tgttaatact tattagcttc ttgggccaac
    2651  aagaaagatc gtatcatcac atagataata gctctattaa aactcagtac
    2701  gtaggcatct caactaatgg aaagtaagaa tgggaaacct tccaaacaac
    2751  agcgacgact tttgggtaaa caaggtaagg ggttggtggc gacgtgcgag
    2801  cagggaaagt tacagctcct gtggctgttg cgatcgctgt ccgtggaaag
    2851  cgccctgcta tcactcccgc aacagtaata ccgtcgtcac tcacagagaa
    2901  tacgttaccg atgtctccaa ctcctcaggc gtatttgtta acaattccag
    2951  tggtagttct tcagtatttc ggattaaccc gtcaaacact cgagtgttta
    3001  actggttgtc tagcattgcc ggatcatatg attcttataa gttcacacgg
    3051  gtacgattta cctatgtacc ttacgccggt tctaatactc ctggaagact
    3101  ctaccttgga tgggatgctg attcacaaga tgttattcag ccagatagag
    3151  catccttagc aaattttagc cctacttcgg aagattcggt gtggacagac
    3201  tcgtacctag tgataccagt ggatcgtgag tggcggtttg tggatgacac
    3251  aaatatctcc tcccgtaaac tagtggatct gggacaacta gttctagcca
    3301  cctggggcgg tgtggataat acagtatgtg gcgaagtgta tgttgagtac
    3351  tcagttgagt tgcgtcaacc ccagcctcct tctggatttg tccaggtagg
    3401  gcgggtcgac gttccgggta ttctcacttt cactggacct gcttttgtgc
    3451  cagcctcaga tttgtcaatc tctgatacta gtttctcatt taatcttaat
    3501  accgctggac agtacgctct tagtatcgac ttgcaagcta ccacatctgg
    3551  tacattgact gtagctggga attgcaccct tttgggtgta gttaagtcac
    3601  agttcgctag tggtgtagga atatacatgt gtatagtcag atccactggt
    3651  ggaccaaatt ccgcggctag catctctatc ggaacgctga ctggcttgtc
    3701  gcgagtccaa tttttcttgt cccgtggtac tacctccgca ggaattcgcg
    3751  tgacctgcat aagctctgag aggcatctca gttaacaata tgcacgagct
    3801  gtcttgtaac acagcaatgg agtaagtgta ctctggtagc aatgggtggg
    3851  gtcgatttcc tacgtctagc tttggccggc tagcgtctct cgtagtgggg
    3901  aaataactca ttgagaccag ctcagaacgc tgacattgtc tgtgtttgga
    3951  tagagggctt ggggaaaact ccgtaaggag gggcgcccga gagcctagta
    4001  acaccaaatt tataaactag gggggaccgt taaggtctcc cccgcccc