Sequence of DPV Pepper mottle virus

Pepper mottle virus NIb, cp genes for polyprotein, partial cds.

ACC No: AB098560

Dated: 2009-01-30 | Length: 1710 | CRC: -2127963102

                
ID   AB098560; SV 1; linear; genomic RNA; STD; VRL; 1710 BP.
XX
AC   AB098560;
XX
DT   24-JUN-2003 (Rel. 76, Created)
DT   30-JAN-2009 (Rel. 99, Last updated, Version 3)
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DE   Pepper mottle virus NIb, cp genes for polyprotein, partial cds.
XX
KW   .
XX
OS   Pepper mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1710
RA   Ogawa Y., Hagiwara K., Iwai H.;
RT   ;
RL   Submitted (23-DEC-2002) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Hisashi Iwai Kagoshima university, Faculty of agriculture; 1-21-24,
RL   Korimoto, Kagoshima, Kagoshima 890-0065, Japan
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RN   [2]
RA   Ogawa Y., Hagiwara K., Iwai H., Izumi S., Arai K.;
RT   "New record of Pepper mottle virus isolated from Capsicum annuum in Japan";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1710
FT                   /organism="Pepper mottle virus"
FT                   /isolate="JKK"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Kagoshima prefecture, Kaseda city"
FT                   /isolation_source="green pepper"
FT                   /note="isolated from green pepper in Kaseda city,
FT                   Kagoshima."
FT                   /db_xref="taxon:12209"
FT   CDS             <1. .1444
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q7TDX2"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TDX2"
FT                   /protein_id="BAC78390.1"
FT                   /translation="PSTVVDNSLMVVLAMHYAFVREGVVFEEIDSICKFFVNGDDLLIA
FT                   VNPERENLLDTLSSHFSDLGLNYDFSSRTRDKSELWFMSHCGISVEGMYIPKLEEERIV
FT                   SILQWDRAELPEYRLEAICAAMIESWGYPQLTHEIRRFYSWLIEKNPYADLASEGKAPY
FT                   ISELALKKLYLNQDVQNDELQVYLRYFAEADEEFECGTYEVHHQSSSRSDTLDAGEEKK
FT                   KNKEVATVSDGMKKKEVESTRDSDVNAGTVGTFTVPRIKSITEKMRMPKQKKKGVLNLA
FT                   HLLEYKPSQVDISNTRSTQAQFDNWYSEVMKAYDLQEEAMGTVMNGLMVWCIENGTSPN
FT                   ISGTWTMMDGDEQVEFPLKPVIENAKPTFRQIMAHFSDVAEAYIEMRNKQEPYMPRYGL
FT                   VRNLRDMGLARYAFDFYEVTSRTSTRAREAHIQMKAAALKSAQTRLFGLDGGIGTQGEN
FT                   TERHTTEDVSPDMHTLLGVRNM"
FT   mat_peptide     <1. .622
FT                   /gene="NIb"
FT                   /product="polymerase"
FT   mat_peptide     623. .1441
FT                   /gene="CP"
FT                   /product="coat protein mature peptide"
FT   polyA_site      1710
XX
SQ   Sequence 1710 BP; 542 A; 301 C; 406 G; 461 T; 0 other;

ab098560 Length: 1710  30-JAN-2009  Type: N  Check: 6574  ..

       1  accttccacc gttgtagaca actcacttat ggttgtactt gctatgcatt
      51  atgcatttgt acgggaaggt gtggtatttg aagaaattga ctccatatgc
     101  aagttcttcg ttaatggaga tgatttgcta atagccgtga acccagaacg
     151  tgaaaactta ttggacacac tgtcaagtca tttttctgat ttagggctca
     201  attatgattt ctcatctcgg acgagggata aatcagaatt gtggttcatg
     251  tcacattgtg ggatttctgt tgaaggtatg tatataccta agcttgaaga
     301  ggagcgaatt gtatcaattc tccaatggga ccgagcggag ctaccagagt
     351  acagattgga ggctatttgt gcagcaatga ttgaatcatg gggataccca
     401  caattaactc atgagattcg aagattctat agctggttaa ttgagaagaa
     451  cccatacgct gacttggcat ctgaaggaaa agctccatat atttctgaac
     501  tagctctaaa gaagctatat ctgaatcagg atgtacaaaa tgatgaactt
     551  caggtctacc tcagatattt cgctgaagcg gatgaagagt ttgaatgtgg
     601  tacatatgaa gttcatcatc agagcagctc aagatcagat acattggatg
     651  ctggagagga gaaaaagaaa aataaagaag tagccactgt gtccgatgga
     701  atgaaaaaga aggaggttga atcaacacgc gattctgatg tgaatgcggg
     751  aactgttgga acattcaccg ttccaagaat caaatcaatc actgagaaga
     801  tgcgtatgcc aaaacaaaag aaaaagggtg ttctcaactt ggctcattta
     851  cttgaataca aaccaagcca agtcgacata tcgaatactc gttcaaccca
     901  ggcacaattt gacaattggt atagtgaagt tatgaaagca tacgatctac
     951  aagaggaggc aatgggtaca gtgatgaatg gcttaatggt ttggtgcatt
    1001  gaaaatggca cgtccccaaa cattagtgga acatggacca tgatggatgg
    1051  agacgaacag gtggaattcc cattaaagcc cgtgatagag aatgctaagc
    1101  cgacttttcg gcagataatg gcgcattttt ctgatgtggc tgaggcatat
    1151  atagaaatgc gcaataagca agaaccatac atgccacgat atggtttggt
    1201  tcgaaattta cgagacatgg gtctggctcg atacgcattt gacttctatg
    1251  aagtcacatc gcgtacgtca acacgtgctc gcgaagccca tatccaaatg
    1301  aaagcagcag cattgaaatc tgctcaaaca aggctatttg gattggatgg
    1351  tggcatagga acacaaggag aaaacacaga gcgccacacc actgaagatg
    1401  tgagccccga catgcatacc ctgcttgggg tcaggaatat gtgactgatg
    1451  tggtctctgg gatgaaatat tattatatgt agtatgcaat atatagtatg
    1501  gcttttctcg ttccagtctt tatattaatg agagtaactt aagtaagtaa
    1551  tttgtacttc aaggattaat caaggtgact ctctgacact ctcagtgagg
    1601  tgacttgttt agtctgagtt tacttattgt gagtataaag aatctctcag
    1651  aaaacgagag tgatttctag acacactcta ggaggtgatc gtagttggca
    1701  tgagagagac