Sequence of DPV Pepper mild mottle virus
Pepper mild mottle virus gene for 183 KDa protein, 126 KDa protein, movement protein, coat protein, complete cds.
ACC No: AB126003
Dated: 2005-04-14 | Length: 6356 | CRC: -154358559
!!NA_SEQUENCE 1.0
ID AB126003 standard; genomic RNA; VRL; 6356 BP.
XX
AC AB126003;
XX
SV AB126003.1
XX
DT 02-MAR-2005 (Rel. 83, Created)
DT 14-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Pepper mild mottle virus gene for 183 KDa protein, 126 KDa protein,
DE movement protein, coat protein, complete cds.
XX
KW .
XX
OS Pepper mild mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tobamovirus.
XX
RN [1]
RP 1-6356
RA Ryu K.;
RT ;
RL Submitted (09-NOV-2003) to the EMBL/GenBank/DDBJ databases.
RL Kh Ryu, Seoul Women's University, Division of Environmental & Life
RL Sciences; Nowon-ku, Kongnung 126, Seoul, 139-774, SOUTH KOREA
RL (E-mail:ryu@swu.ac.kr, URL:www.virusbank.org, Tel:82-2-970-5618,
RL Fax:82-2-970-5610)
XX
RN [2]
RA Yoon J., Choi J., Ryu K.;
RT "Molecular characterization of pepper mild mottle virus Kr strain";
RL Unpublished.
XX
CC This sequence was obtained by the financial support by the
CC BioGreen 21 project from the Rural Development Administration in
CC 2002-2003.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6356
FT /db_xref="taxon:12239"
FT /mol_type="genomic RNA"
FT /organism="Pepper mild mottle virus"
FT /strain="Kr"
FT CDS 70. .4908
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5DWU9"
FT /transl_except=(pos:3421. .3423,aa:Tyr)
FT /transl_table=1
FT /product="183 KDa protein"
FT /protein_id="BAD90598.1"
FT /translation="MAYTQQATNAALASTLRGNNPLVNDLANRRLYESAVEQCNAHDRR
FT PKVNFLRSISEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGST
FT TYDIGGNFAAHMFKGRDYVHCCMPNMDLRDVMRHNAQKDSIELYLSKLAQKKKVIPPYQ
FT KPVFDKYTDDPQSVVCSKPFQHCEGVSHCTDKVYAVALHSLYDIPADEFGAALLRRNVH
FT VCYAAFHFSENLLLEDSYVSLDDIGAFFSREGDMLNFSFVAESTLNYTHSYSNVLKYVC
FT KTYFPASSREVYMKEFLVTRVNTWFCKFSRLDTFVLYRGVYHRGVDKEQFYSAMEDAWH
FT YKKTLAMMNSERILLEDSSSVNYWFPKMKDMVIVPLFDVSLQNEGKRLARKEVMVSKDF
FT VYTVLNHIRTYQSKALTYANVLSFVESIRSRVIINGVTARSEWDVDKALLQSLSMTFFL
FT QTKLAMLKDDLVVQKFQVHSKSLTEYVWDEITAAFHNCFPTIKERLINKKLITVSEKAL
FT EIKVPDLYVTFHDRLVKEYKSSVEMPVLDVKKSLEEAEVMYNALSEISILKDSDKFDVD
FT VFSRMCNTLGVDPLVAAKVMVAVVSNESGLTLTFERPTEANVALALQPTIASKEEGSLK
FT IVSSDVGESSIKEVVQKSEISMLGLTGSTVSDEFQRSTEIESLQQFHMVSTETIIRKQM
FT HAMVYTGPLKVQQCKNYLDSLVASLSAAVSNLKKIIKDTAAIDLETKEKFGVYDVCLKK
FT WLVKPQSKGHAWGVVMDSDYKCFVALLTYDGENIVCGETWRRVAVSSESLVYSDMGKIR
FT AIRSVLKDGEPHISSAKVTLVDGVPGCGKTKEILSRVNFDEDLVLVPGKQAAEMIKRRA
FT NSSGLIVATKENVRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAF
FT VYGDTQQIPYINRVATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQKYEGQVMCT
FT SSVTRSVSHEVIQGAAVMNPVSKPLKGKVITFTQSDKSLLLSRGYEDVHTVHEVQGETF
FT EDVSLVRLTPTPVGIISKQSPHLLVSLSRHTRSIKYYTVVLDAVVSVLRDLECVSSYLL
FT DMYKVDVSTQYQLQIESVYKGVNLFVAAPKTGDVSDMQYYYDKCLPGNSTILNEYDAVT
FT MQIRENNLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENLVAMIKRNF
FT NSPELIGVVDIEDTASLVVDKFFDAYFIEEKKKPKNIPLLSRASLERWIEKQEKSTIGQ
FT LADFDFIDLPAVDQYRHMIKQQPKQRLDLSIQTEYPALQTIVYHSKKINALFGPVFSEL
FT TRQLLESIDSSRFMFYTRKTPTQIEEFFSDLDSNVPMDILELDISKYDKSQNEFHCAVE
FT YEIWKRLGLDDFLAEVWKHGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAAC
FT LSSMLPMERLIKGAFCGDDSILYFPKGTDFPDIQQGANLLWNFEAKLFRKRYGYFCGRY
FT IIHHDRGCIVYYDPLKLISKLGAKHIKNREHLEEFRTSLCDVAGSLNNCAYYTHLDDAV
FT GEVIKTAPPGSFVYRALVKYLCDKRLFQTLFLE"
FT CDS 70. .3423
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5DWU8"
FT /transl_table=1
FT /product="126 KDa protein"
FT /protein_id="BAD90599.1"
FT /translation="MAYTQQATNAALASTLRGNNPLVNDLANRRLYESAVEQCNAHDRR
FT PKVNFLRSISEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGST
FT TYDIGGNFAAHMFKGRDYVHCCMPNMDLRDVMRHNAQKDSIELYLSKLAQKKKVIPPYQ
FT KPVFDKYTDDPQSVVCSKPFQHCEGVSHCTDKVYAVALHSLYDIPADEFGAALLRRNVH
FT VCYAAFHFSENLLLEDSYVSLDDIGAFFSREGDMLNFSFVAESTLNYTHSYSNVLKYVC
FT KTYFPASSREVYMKEFLVTRVNTWFCKFSRLDTFVLYRGVYHRGVDKEQFYSAMEDAWH
FT YKKTLAMMNSERILLEDSSSVNYWFPKMKDMVIVPLFDVSLQNEGKRLARKEVMVSKDF
FT VYTVLNHIRTYQSKALTYANVLSFVESIRSRVIINGVTARSEWDVDKALLQSLSMTFFL
FT QTKLAMLKDDLVVQKFQVHSKSLTEYVWDEITAAFHNCFPTIKERLINKKLITVSEKAL
FT EIKVPDLYVTFHDRLVKEYKSSVEMPVLDVKKSLEEAEVMYNALSEISILKDSDKFDVD
FT VFSRMCNTLGVDPLVAAKVMVAVVSNESGLTLTFERPTEANVALALQPTIASKEEGSLK
FT IVSSDVGESSIKEVVQKSEISMLGLTGSTVSDEFQRSTEIESLQQFHMVSTETIIRKQM
FT HAMVYTGPLKVQQCKNYLDSLVASLSAAVSNLKKIIKDTAAIDLETKEKFGVYDVCLKK
FT WLVKPQSKGHAWGVVMDSDYKCFVALLTYDGENIVCGETWRRVAVSSESLVYSDMGKIR
FT AIRSVLKDGEPHISSAKVTLVDGVPGCGKTKEILSRVNFDEDLVLVPGKQAAEMIKRRA
FT NSSGLIVATKENVRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAF
FT VYGDTQQIPYINRVATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQKYEGQVMCT
FT SSVTRSVSHEVIQGAAVMNPVSKPLKGKVITFTQSDKSLLLSRGYEDVHTVHEVQGETF
FT EDVSLVRLTPTPVGIISKQSPHLLVSLSRHTRSIKYYTVVLDAVVSVLRDLECVSSYLL
FT DMYKVDVSTQ"
FT CDS 4909. .5682
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5DWU7"
FT /note="28 KDa protein"
FT /transl_table=1
FT /product="movement protein"
FT /protein_id="BAD90600.1"
FT /translation="MALVVKDDVKISEFINLSTAEKFLPAVMTSVKTVRISKVDKVIAM
FT ENDSLSDVDLLKGVKLVKDGYVCLAGLVVSGEWNLPDNCRGGVSVCLVDKRMQRDDEAT
FT LGSYRTSAAKKRFAFKLIPNYSITTADAERNVWQVLVNIRGVAMEKGFCPLSLEFVSVC
FT IVHKSNIKLGLREKITSVSEGGPVELTEAVVDEFIESVPMADRLRKFRNQSKKRSNRYV
FT GKRNDNKGVNKERKLFDKVRIGQNSESSDAESSSF"
FT CDS 5685. .6158
FT /codon_start=1
FT /db_xref="GOA:Q780A7"
FT /db_xref="InterPro:IPR001337"
FT /db_xref="UniProt/TrEMBL:Q780A7"
FT /note="17 KDa protein"
FT /transl_table=1
FT /product="coat protein"
FT /protein_id="BAD90601.1"
FT /translation="MAYTVSSANQLVYLGSVWADPLELQNLCTSALGNQFQTQQARTTV
FT QQQFSDVWKTIPTATVRFPATGFKVFRYNAVLDSLVSALLGAFDTRNRIIEVENPQNPT
FT TAETLDATRRVDDATVAIRASISNLMNELVRGTGMYNQALFESASGLTWATTP"
FT 3'UTR 6159. .6356
XX
SQ Sequence 6356 BP; 1880 A; 1166 C; 1520 G; 1790 T; 0 other;
AB126003 Length: 6356 April 19, 2005 08:53 Type: N Check: 1229 ..
1 gtaaattttt cacaatttaa caacaacaac acaaacaaca aacaacatta
51 caaacaaatt acaactacaa tggcttacac acaacaagct accaacgccg
101 cattagcaag tactctccga gggaacaacc ccttggtgaa cgatcttgct
151 aatcggagac tgtacgaatc agcggtcgaa caatgcaatg cacatgaccg
201 caggcccaag gttaattttt taaggtcgat aagcgaagag cagacgctta
251 tcgcaactaa ggcctaccct gagttccaaa ttacgttcta caacacgcag
301 aacgctgtgc acagtctcgc aggtggactt cggtctttgg aactagaata
351 cttgatgatg cagatcccct atggttcaac gacatacgat atcgggggaa
401 attttgccgc tcacatgttt aaaggtcgtg actacgttca ttgttgcatg
451 cctaatatgg acttacgtga cgtcatgcgt cataatgctc aaaaggatag
501 cattgaactg tacctttcaa agcttgcgca aaagaaaaaa gtaataccgc
551 catatcaaaa gccagtcttt gataaataca cggacgatcc gcaatcggta
601 gtgtgctcga aacctttcca gcactgcgaa ggcgtttcgc actgcacgga
651 taaagtatac gctgtcgctt tgcacagttt atacgacatt ccagcagatg
701 aatttggtgc agcacttctg aggagaaatg ttcatgtctg ttatgctgct
751 ttccactttt ctgagaatct tcttttagaa gattcgtatg ttagtcttga
801 cgacataggc gctttcttct cgagagaggg tgatatgttg aacttttcct
851 ttgtagcaga gagtacttta aattatactc attcctatag taatgtgctt
901 aagtatgtgt gtaagactta cttccccgct tctagtagag aagtgtacat
951 gaaggagttt ttggtaacta gggtaaatac ttggttttgt aagttttcaa
1001 ggttagatac ctttgtacta tatagaggtg tgtaccacag aggtgtagac
1051 aaggagcaat tttatagtgc aatggaagat gcttggcatt acaaaaagac
1101 tttggcgatg atgaatagcg aaaggatcct cttggaggat tcatcgtctg
1151 ttaattattg gtttccaaag atgaaagata tggtgatagt acctttgttc
1201 gacgtatctt tacagaacga ggggaaaagg ttagcaagaa aggaggttat
1251 ggtcagcaag gacttcgttt atactgtgct taatcatatt cgcacatacc
1301 agtcgaaagc gcttacttac gccaatgtat tatcgttcgt tgagtcgata
1351 agatcaagag tgataattaa tggggtgact gcgcgctcag agtgggatgt
1401 ggacaaggct ttgttgcagt ctctgtcaat gacctttttc ttgcagacca
1451 aattggccat gctcaaagat gacctcgtgg ttcaaaaatt tcaagtgcat
1501 tctaaatcgc tcactgaata tgtctgggat gagattactg ccgcttttca
1551 caactgtttt cctacaatca aggagaggtt gattaacaag aaactcataa
1601 ctgtttcgga aaaggctctt gaaattaaag tacctgactt gtatgtgact
1651 ttccacgaca gattagttaa agagtacaag tcttcagtgg aaatgccggt
1701 actggacgtt aaaaagagct tggaagaagc ggaagtgatg tacaatgctt
1751 tgtcagaaat ctcaattctt aaggatagtg acaagtttga tgttgatgtt
1801 ttttcccgaa tgtgtaatac tttaggcgta gatccattgg tggcagcaaa
1851 ggtaatggta gccgtggttt caaatgagag tggtttgacc ttaacgtttg
1901 agcggcctac cgaagcaaat gtcgcacttg cattgcaacc gacaattgca
1951 tcaaaggagg aaggttcatt aaagattgtg tcgtcagacg taggtgagtc
2001 ctcaatcaag gaagtggtcc aaaaatcgga gatttctatg ctaggtctaa
2051 caggcagcac agtgtccgat gagttccaaa gaagtacaga aatcgagtcg
2101 ttgcagcagt tccatatggt atccacagag acgattatcc gtaaacagat
2151 gcatgcgatg gtgtatactg gtccgctaaa agttcaacaa tgcaagaact
2201 atttagacag cctagtagcc tcgctctctg ctgcggtatc aaacctgaag
2251 aagataatca aggacacagc tgcgatagat ctcgagacta aggaaaaatt
2301 tggagtctac gacgtgtgcc ttaagaaatg gttggtgaaa cctcaatcga
2351 aaggacatgc ttggggtgtg gtgatggact cagactataa gtgctttgta
2401 gcgcttctca catacgatgg cgagaacatt gtgtgcggag agacatggcg
2451 tagagtcgca gtgagctccg aatctttggt gtattcagat atggggaaga
2501 taagagctat acgctcggtg cttaaagacg gtgaacccca tataagtagt
2551 gcaaaggtta cacttgttga tggtgttcca ggttgcggga agacaaagga
2601 gattctttcg agggtcaact ttgacgaaga tctggttcta gtaccaggaa
2651 aacaggctgc cgaaatgata aaaagaagag caaacagttc tggtttaatc
2701 gtggcgacca aggagaacgt aaggacggta gactctttct taatgaatta
2751 cggtcgaggt ccgtgccaat acaaaaggct gtttctggat gaaggtctaa
2801 tgttacaccc cggttgtgtt aattttctgg ttggcatgtc tctatgctcc
2851 gaggcttttg tttatggaga cacccagcag attccttaca tcaacagagt
2901 tgcaactttt ccctatccta agcatttgag tcaactcgag gtcgatgctg
2951 ttgagactcg cagaacaaca ttgcggtgtc cggctgatat caccttcttc
3001 ttgaatcaga agtacgaagg gcaagttatg tgcacatcaa gtgttacacg
3051 ctcggtgtca cacgaggtca tccaaggtgc agcagtaatg aatccagtgt
3101 ctaaaccact taaagggaag gtgattacat tcactcaatc agacaagtca
3151 ttgctgctct caaggggtta cgaagatgtg cataccgttc atgaggtgca
3201 aggggaaacg tttgaagacg tctcattagt gagactgacg cctacacccg
3251 tgggaataat ttcaaagcag agtccgcacc tgttggtctc gttgtctagg
3301 catacaaggt caatcaaata ttacactgtt gtactagatg cagtcgtttc
3351 agtgcttaga gatttggagt gtgtgagtag ttacctgtta gatatgtaca
3401 aagttgatgt gtcgactcaa tagcaattac agatagaatc ggtgtacaaa
3451 ggtgttaacc ttttcgtcgc agccccgaaa acaggagatg tttctgacat
3501 gcaatattac tatgacaagt gtttgccggg aaacagtact atacttaatg
3551 agtatgatgc tgtaactatg caaatacgag aaaataattt gaatgtcaag
3601 gattgtgtgt tggatatgtc gaagtcggtg cctcttccga gagaatctga
3651 gacgacattg aaacctgtga tcaggactgc tgctgaaaaa cctcgaaaac
3701 ctggattgtt ggaaaacttg gtcgcgatga tcaaaagaaa tttcaactct
3751 cccgaattaa taggggtcgt tgacatcgaa gacaccgctt ctctagtagt
3801 agataagttt tttgatgcat actttattga agaaaagaaa aaacccaaaa
3851 atatacctct gctttcaagg gcgagtttgg aaagatggat agaaaagcaa
3901 gaaaagtcga caattggcca gttggctgat tttgacttta ttgatcttcc
3951 agccgttgat caatataggc acatgatcaa gcagcagccg aaacagcgtt
4001 tggatcttag tattcaaact gaatacccgg ctttgcaaac tattgtgtat
4051 catagcaaga aaatcaatgc gctttttggt cctgtatttt cagaattaac
4101 aagacaactg ctagagtcaa ttgacagttc gagattcatg ttttatacaa
4151 ggaaaacgcc tacacagatc gaagagtttt tctcagatct ggactctaat
4201 gttcctatgg acatattaga gctggacatt tccaagtatg acaaatcaca
4251 gaacgaattt cattgtgcag ttgagtatga gatttggaaa aggttaggct
4301 tagacgattt cttggccgaa gtttggaaac acgggcatcg gaagacaacg
4351 ttgaaagact acacagccgg aataaaaacg tgtttgtggt atcaaaggaa
4401 aagtggtgat gtcaccacat tcattggaaa cacgatcatt attgctgcat
4451 gtctgtcctc tatgctaccg atggagagat tgattaaagg tgccttttgt
4501 ggtgatgata gtatactata ctttccaaag ggcactgatt tccctgatat
4551 tcaacagggt gcaaatcttc tctggaattt tgaagccaag ttgtttagga
4601 agagatatgg ttacttttgc ggtaggtaca taatccacca tgacagaggt
4651 tgtattgtat attatgaccc tctaaaattg atctcgaaac tcggtgctaa
4701 acacatcaag aatagagaac atttagagga atttagaacc tctctttgtg
4751 atgttgctgg gtcgttgaac aattgtgcgt actatacaca tttggacgac
4801 gctgtcggtg aggttattaa aaccgcacct cctggttcgt ttgtttatag
4851 agcattagtt aagtacttgt gtgataaaag gttgtttcaa acattgtttc
4901 tggaataaat ggcgttagta gtcaaggatg acgttaagat ttctgagttc
4951 atcaatttgt ctaccgctga gaaattctta cctgctgtta tgacttcggt
5001 caagacggta cgaatttcga aagttgacaa agtgattgca atggaaaacg
5051 attcgttatc cgatgtagat ttgcttaaag gtgttaagct tgttaaagat
5101 ggttatgtgt gtttggcagg gttagttgtg tccggggagt ggaacctacc
5151 ggacaactgc agaggtggag taagcgtttg tttggttgac aagagaatgc
5201 aaagagatga cgaagcaaca cttggatctt atagaaccag tgcggctaag
5251 aaacgatttg ccttcaaatt gatcccgaat tatagcatta ctaccgccga
5301 tgctgagaga aatgtttggc aagttttagt taatattaga ggtgttgcca
5351 tggaaaaggg tttctgtcct ttatctttgg agtttgtctc agtttgtatt
5401 gtacacaaat ccaatataaa attaggcttg agagagaaaa ttactagtgt
5451 gtcggaagga ggacccgttg aacttacaga agcagttgtt gatgagttca
5501 tcgaatcagt tccaatggct gacagattac gtaaatttcg caatcaatcc
5551 aagaaaagaa gtaataggta tgtaggtaag agaaatgata ataagggtgt
5601 gaataaggaa aggaagctgt ttgataaggt tagaattggg cagaactcgg
5651 agtcatcgga cgccgagtct tcttcgtttt aactatggct tacacagttt
5701 ccagtgccaa tcaattagtg tatttaggtt ctgtatgggc cgatccatta
5751 gagttacaaa atctatgtac ttcggcgtta ggtaatcagt ttcaaacaca
5801 gcaggctaga actacggttc aacagcagtt ctctgatgtg tggaagacca
5851 taccgaccgc tacagttaga tttcctgcta ctggtttcaa agttttccga
5901 tataatgccg tgctagattc tctagtgtcg gcacttctcg gagcctttga
5951 tactaggaat aggataatag aagtagaaaa tccgcaaaat cctacaactg
6001 ccgagacgct tgatgcgacg aggcgggtag atgatgcgac ggtggccatt
6051 agggccagta taagtaacct catgaatgag ttagttcgtg gcacgggaat
6101 gtacaatcaa gctctgttcg agagcgcgag tggactcacc tgggctacaa
6151 ctccttagac atgatggtgt aaataagttg gacgaacgtt aaacgtccgt
6201 ggcgagtacg ataactcgta gtgtttttcc ctccacttaa atcgaagggt
6251 tgtcgttagg atggaacgca attaaataca tgtgtgacgt gtatttgcga
6301 acgacgtaat tattttcagg ggttcgaatc ccccccgaac cgcgggtagc
6351 ggccca