Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHBJ2.

ACC No: AB179892

Dated: 2004-08-20 | Length: 1180 | CRC: -758751763

                !!NA_SEQUENCE 1.0
ID   AB179892   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179892;
XX
SV   AB179892.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHBJ2.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHBJ2"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6M7"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20306.1"
FT                   /translation="MAAVTFATAITNTTASRSTSTGMVQFGNFPPVPLRSTIATTVITP
FT                   VVQPKLYTVQFGSLEPIVVKGEAGSSAKATCQQPSGEINASLKEATALEVAKPKPNAVL
FT                   RMHEEMNKERALFLDWETSLTRRSYGIADNEKVIMTARGVSKIVLRSSRAMKQKRARER
FT                   RRAQQPIVLRWEPKLSTISIGRGPSANMIEAEEVHTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNRKIINPGVVCAGWSGIVVRNGILAQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 389 A; 257 C; 296 G; 238 T; 0 other;

AB179892  Length: 1180  August 31, 2004 08:43  Type: N  Check: 1008  ..

       1  gattaaagca aacacaaatc tctcgaagca ttcaagcaac caaagatttt
      51  caaatctttc atcgttttca aagcaaccaa caacaacgca agcaatggca
     101  gcagttacat ttgcaaccgc aatcacgaac accaccgcaa gcagatcaac
     151  atccaccgga atggtacaat ttgggaattt cccaccagtg ccgttgcgat
     201  ccaccatcgc taccacagtt atcaccccag tggtacaacc caagctgtac
     251  acagtacagt tcggaagcct tgaaccgatt gtcgtcaagg gtgaagcagg
     301  gtcctctgct aaggcaacct gccagcagcc tagcggtgaa ataaacgcta
     351  gcctcaagga agccacagct ttggaggttg caaaacccaa accgaatgcc
     401  gtgttaagga tgcacgagga aatgaacaag gagagagcac tcttcttaga
     451  ctgggaaacc agtttaacaa ggcgctcata tggcattgct gacaacgaga
     501  aggtcatcat gacagctcgt ggtgttagca aaatagtgct taggagctca
     551  agggcgatga aacaaaagcg cgcaagagaa aggcgcaggg cacaacaacc
     601  aattgtactg agatgggagc ccaagttgag cacaatctca atcggaagag
     651  gaccctccgc aaacatgatt gaggcagaag aggttcacac gaagtggccg
     701  ttgcataaaa caccatcaat gaagaggaag acggtgcaca ggagatgcaa
     751  gatgaatgat caaggaattg acatgttaat gcgttctttg attaaaatct
     801  ttaaggcgaa gagtgcgaac attgagttca ttggaaggaa gtccattaaa
     851  gtggattttg tgaagaaaga gcaaacgaag tttgccagag tacaagtagt
     901  gcatttgctc ggaaagcggg cacaacgcga cctgttgact ggtgcagagg
     951  agaaccactt cattgacacc ctaagcacct actcaggtaa taggaaaatc
    1001  ataaacccag gagtggtgtg cgctggttgg agtggcattg ttgtcagaaa
    1051  tggcattttg gctcagaagc agagcagaag tccttcgcaa gcctttgtga
    1101  ttcgaggaga acatgaaggg aagttgtatg acgccagagt taaggtcaca
    1151  aaggtgatga gccataaaat catacactat