Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHHH30.

ACC No: AB179894

Dated: 2004-08-20 | Length: 1180 | CRC: -1792371118

                !!NA_SEQUENCE 1.0
ID   AB179894   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179894;
XX
SV   AB179894.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHHH30.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHHH30"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6M5"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20308.1"
FT                   /translation="MAAVTFASAITSAITNKPALTGMVQFGNFTPMPLRSTTVTTVATS
FT                   MAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRAREK
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKKRTVHRTCKMND
FT                   QGIDMLIRSLVKIFKTKSANIEYIGKKSVKVDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENYFIDILSRYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 394 A; 258 C; 295 G; 233 T; 0 other;

AB179894  Length: 1180  August 31, 2004 08:43  Type: N  Check: 8192  ..

       1  gataaaagca aacacaaatt tttcgaagca ttcaagcaat caaagattct
      51  taaatctttc atcgttatca aagtaatcgc caacagcaaa ccaaatggca
     101  gcagttacat tcgcatcagc tatcaccagc gccatcacca acaaaccagc
     151  actcaccgga atggtacagt ttgggaattt cacaccaatg ccattgcgat
     201  ccaccaccgt caccacagtc gccacgtcaa tggcgcagcc taaactgtac
     251  acagtgcagt ttggaagcct tgacccagta gtcgtcaaga gtggagcagg
     301  gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ttggaggttg cgaaacctag accgaatgcc
     401  gtgttaagga tgcacgagga agcaaacaaa gagagagcac tctttttgga
     451  ctgggaagct agtttaaaga gaagctcgta tggaattgct gagaacgaga
     501  aagttgtaat gacaactcgt ggcgtcagca agatagtgcc cagaagttca
     551  agggcaatga agcaaaagcg cgcaagggag aagcgtagag cgcagcaacc
     601  aattatacta aagtgggagc ccaaattgag tgggatctca attggaggag
     651  ggctctccgc gagcgcaatc gaagtagaag aagtccgcac aaagtggccg
     701  cttcacaaga caccgtcaat gaagaagagg acggtgcaca gaacatgtaa
     751  gatgaacgac caaggaattg acatgttgat acgatccctg gttaagattt
     801  tcaagaccaa gagcgccaac attgagtaca tcgggaagaa atcggtcaag
     851  gttgatttca tcagaaaaga gcggacgaaa ttcgcaagaa tccaggttgc
     901  acacttactc gggaagcgag cacagcgcga cttgtcaact ggaatggaag
     951  aaaactattt tattgacatt ctcagcagat actcaggtaa caaaacaacc
    1001  ataaatccag gagtagtttg cgcaggttgg agtggcatag ttgttagaaa
    1051  cggaattcta actcagaaac gaagcaggag cccatcagag gcctttgtaa
    1101  ttagaggcga gcacgaaggc aagttgtatg acgccaggat caaagtcacg
    1151  agaacaatga gtcacaagat tgtgcacttt