Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHHZ3.

ACC No: AB179895

Dated: 2004-08-20 | Length: 1180 | CRC: 187403109

                !!NA_SEQUENCE 1.0
ID   AB179895   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179895;
XX
SV   AB179895.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHHZ3.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHHZ3"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6M4"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20309.1"
FT                   /translation="MAAVTFASAITNAITNRPALTGMVQFGSFPPVLLRSTTVTTVATS
FT                   VAQPKLYTVQFGNLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRAREK
FT                   RRAQQPIILKWEPKLSAISIGGGLSASAIEAEEVRTKWPLHKTPSMKKRTVHRICEMND
FT                   QGIDMLTRSLVKIFKARSANIEYIGKKSIKIDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGIVIRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 391 A; 259 C; 297 G; 233 T; 0 other;

AB179895  Length: 1180  August 31, 2004 08:43  Type: N  Check: 7311  ..

       1  gataaaagca aacacaaatc tttcgaagca ttcaagcaat caaagattct
      51  caaatctttc atcgttacca aagcaatcac caacagcaaa ccaaatggca
     101  gcagttacat tcgcatcagc tatcaccaac gccatcacca acagaccagc
     151  actcaccgga atggtacagt ttgggagttt cccaccagtg ctattgcggt
     201  ccaccaccgt caccacagtc gccacttcag tggcgcaacc taaactgtac
     251  acagtgcagt ttggaaacct tgacccagta gttgtcaaga gtggagcagg
     301  gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaaacctag accaaatgcc
     401  gtgttgagga tgcacgagga agcaaacaag gagagagcac tctttttgga
     451  ctgggaggct agtttgaaga gaagctcgta tggaattgct gagaacgaga
     501  aagttgtaat gacaactcgt ggcgtcagca agatagtgcc cagaagttca
     551  agggcaatga agcaaaagcg cgcaagggag aagcgtagag cgcagcaacc
     601  aattatacta aagtgggagc ccaaattgag cgcgatttca atcggaggag
     651  ggctctctgc gagcgcgatc gaagcagaag aggtccgcac aaagtggccg
     701  cttcataaga caccgtcaat gaagaagaga acggtgcaca gaatatgcga
     751  gatgaacgac caaggaattg acatgttgac acgatccctg gttaagattt
     801  tcaaggctag gagtgccaac attgagtaca tcggaaagaa gtcgattaag
     851  atcgatttca tcaggaaaga acggacgaaa ttcgcaagaa ttcaagtagc
     901  acacttactc gggaagagag cacagcgcga cttatcaact ggaatggaag
     951  aaaaccattt tattgacatt cttagcgggt actcaggcaa caaaacaacc
    1001  ataaatccag gagtagtttg tgcaggttgg agtggcatag tcattagaaa
    1051  tggaattcta acccagaaac gaagcagaag tccatcagag gcctttgtaa
    1101  ttagaggtga gcacgaaggc aagttgtacg atgccaggat caaagtcacg
    1151  agaacaatga gtcacaagat tgtgcacttt