Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHK16.

ACC No: AB179896

Dated: 2004-08-20 | Length: 1180 | CRC: 717785019

                !!NA_SEQUENCE 1.0
ID   AB179896   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179896;
XX
SV   AB179896.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHK16.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHK16"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6M3"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20310.1"
FT                   /translation="MAAVTFASAITNATTNKPALTGMVQFGSFPPMPLRSTTVTTVDTS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWETSLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEIEEVRTKWPLHKTPSMKRKTVHRKCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVEHLLGKRAQRDLS
FT                   TGAEENHFIDTLSTYSGNRKIINPGVVCAGWSGIVVRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 391 A; 257 C; 300 G; 232 T; 0 other;

AB179896  Length: 1180  August 31, 2004 08:43  Type: N  Check: 8150  ..

       1  gataaaagca aacacaaacc tttcgaagca ttcaagcaat caaagattct
      51  caaatctttc atcgttatca aagcaatcac caacagcaaa ccaaatggca
     101  gcagttacat tcgcatcagc tatcaccaac gccaccacca acaaaccagc
     151  actcaccgga atggtacagt ttgggagttt cccaccaatg ccattgcgat
     201  ccactaccgt caccacagtc gacacttcag tggcgcaacc taaactgtac
     251  acagtgcagt ttggaagcct tgacccagta gttgtcaaga gtggagcagg
     301  gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg caaaacctag atcaaacgcc
     401  gtgttgagga tgcacgagga agcaaataag gagagagcac tctttttgga
     451  ctgggagact agtttgaaga gaagctcgta tggaattgct gagaacgaaa
     501  aagttgtaat gacaactcgt ggcgtcagca agatagtgcc cagaagttca
     551  agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgcagcaacc
     601  aattatatta aagtgggagc ccaaattgag cgggatctca attggaggag
     651  ggctctccgc gagcgcgatc gaaatagaag aagttcgcac aaagtggccg
     701  cttcacaaga caccatcaat gaagaggaag acggtgcaca gaaaatgcaa
     751  gatgaacgat caaggaattg acatgctaat gcgttctttg attaaaatct
     801  ttaaggcgaa gagtgcgaac attgagttca tcggaaggaa gtccattaaa
     851  gtggatttcg taaagaaaga gcaaacgaag tttgccagag tacaggtaga
     901  acatttgctc ggaaagcggg cacaacgcga cctgtcgact ggtgcagaag
     951  agaaccactt cattgacacc ctaagcacct actcaggaaa taggaaaatc
    1001  ataaacccag gagtggtgtg cgctggttgg agtggcattg ttgtcagaaa
    1051  cggcattttg actcagaagc agagcagaag tccttcgcaa gcctttgtga
    1101  ttcgaggaga acatgaaggg aagttgtatg acgccagggt aaaggtcaca
    1151  aaggtgatga gccacaaaat catacactac