Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHN5.

ACC No: AB179904

Dated: 2004-08-20 | Length: 1180 | CRC: 506373776

                !!NA_SEQUENCE 1.0
ID   AB179904   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179904;
XX
SV   AB179904.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHN5.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHN5"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6L5"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20318.1"
FT                   /translation="MAAVTFASAITNATINKPALTGMVQFGSFPPMPLRSTTVTTAATS
FT                   VAQPKLYTVQFGSLDPVVVKGRAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSDAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RIAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKKRMVHRICKMND
FT                   QGIDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKEQTKFARIQVAHLLGKRARRDLS
FT                   TGMEENHFIDILSEYSGYKTTINPGVICAGWSGIVVRNGILAQRRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIMHF"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 383 A; 257 C; 302 G; 238 T; 0 other;

AB179904  Length: 1180  August 31, 2004 08:43  Type: N  Check: 1259  ..

       1  gataaaagca aacacaaatc tttcgaagca ttcaagcaat caaagatctt
      51  taaatctttc atcgttatca aagcaatcac caacagcaaa ccaaatggca
     101  gcagttacat tcgcatcagc tatcaccaac gccactatca ataaaccagc
     151  actcaccgga atggtacagt ttgggagttt cccaccaatg ccattgcgat
     201  caaccaccgt caccacagcc gccacttcgg tggcgcaacc taaactgtac
     251  acagtgcagt ttggaagcct tgacccagta gtcgtcaagg gtagagcagg
     301  gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaagcctag atcggatgcc
     401  gtgttgagga tgcacgagga agcaaacaag gagagagcac tctttttgga
     451  ctgggaggct agtttgaaga gaagctcgta tggaattgct gagaacgaga
     501  aagttgtgat gacaactcgt ggcgtcagca agatagtgcc cagaagttca
     551  agggcaatga agcaaaagcg cgcaagggag aggcgtatag cgcagcaacc
     601  aattatacta aagtgggagc ccaaattgag cgggatctca attggaggag
     651  ggctctccgc gagcgcgatc gaagtggaag aagtccgcac aaagtggccg
     701  cttcacaaga caccgtcaat gaagaagagg atggtgcaca gaatatgcaa
     751  gatgaacgac caaggaattg acatgttgac acgatccctg gttaagattt
     801  tcaagactaa gagtgccaac attgaataca tcgggaagaa atcgatcaag
     851  gttgatttca tcagaaaaga gcagacgaaa ttcgcaagaa tccaagtagc
     901  acacttactc gggaagcgag cacgtcgcga cttgtcaact ggaatggaag
     951  aaaaccattt tattgatatt ctcagcgagt actcaggtta caaaacaacc
    1001  attaatccag gagtgatttg cgcaggttgg agtggcatag ttgttagaaa
    1051  tggaattcta gcccagagac gaagcagaag cccatcagag gcctttgtaa
    1101  ttaggggtga gcacgaaggc aagttgtacg atgccaggat caaagtcacg
    1151  aggacaatga gtcacaagat tatgcacttt