Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHSC2.

ACC No: AB179905

Dated: 2004-08-20 | Length: 1180 | CRC: 383475524

                !!NA_SEQUENCE 1.0
ID   AB179905   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179905;
XX
SV   AB179905.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHSC2.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHSC2"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6L4"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20319.1"
FT                   /translation="MAAVTFASAITNAITNKPALTGMVQFGSFPPVPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGTSIGGGLSASAIEAEEVRTKWPLHKTPSMKKRTVHRICRMND
FT                   QGVDMLTRSLVKIFKTKNANIEYIGKKSIKIDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSAYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFIIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 394 A; 259 C; 296 G; 231 T; 0 other;

AB179905  Length: 1180  August 31, 2004 08:43  Type: N  Check: 6716  ..

       1  gattaaagca aacacaaatc tttcaaagca ttcaagcaat caaagattct
      51  caaatctttc atcgatatca aagcaaacac caacaacaaa tcaaatggca
     101  gcagttacgt ttgcatcagc tatcaccaac gccatcacca acaaaccagc
     151  actcaccgga atggtacagt ttgggagttt cccaccagtg ccattgcgat
     201  ccaccaccgt caccacagtc gccacttcag tggcgcaacc taaactgtac
     251  acagtgcagt ttggaagcct cgacccagta gttgtcaagg gtggagcagg
     301  gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaagcctag accaaatgcc
     401  gtgttgagga tgcacgagga agcaaacaag gagagagcac tctttttgga
     451  ttgggaggct agtttgaaga gaagctcgta tggaattgct gagaacgaga
     501  aagttgtaat gacaactcgt ggcgtgagca agatagtgcc cagaagctca
     551  agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgcagcaacc
     601  aattatacta aagtgggagc ccaaattgag cgggacctca atcggaggag
     651  ggctctctgc gagcgcgatt gaagcagaag aggttcgcac aaagtggccg
     701  cttcataaga caccgtcaat gaagaagagg acggtgcaca gaatatgcag
     751  gatgaatgac caaggagttg acatgctgac acgatccctg gttaagattt
     801  tcaagactaa gaatgccaac attgagtaca tcggaaagaa gtcgattaag
     851  atcgatttca tcagaaaaga acgaacgaaa ttcgcaagaa ttcaagtagc
     901  acacttactc gggaagagag cacagcgcga cttatcaact ggaatggaag
     951  aaaaccattt tattgacatt ctcagcgcgt actcaggtaa caaaacaacc
    1001  ataaatccag gagtagtttg cgcaggttgg agtggcatag tcgttagaaa
    1051  tggaatttta acccagaaac gaagcagaag cccatcagag gcctttataa
    1101  tcagaggtga gcacgaaggc aaattgtacg atgccaggat caaagtcacg
    1151  aggacaatga gtcacaagat tgtgcacttt