Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHYK56.

ACC No: AB179909

Dated: 2004-08-20 | Length: 1180 | CRC: 107365339

                !!NA_SEQUENCE 1.0
ID   AB179909   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179909;
XX
SV   AB179909.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHYK56.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHYK56"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6L0"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20323.1"
FT                   /translation="MAAVTFASAITNTITNKPALIGMVQFGSFPPVPLRSTTVTTVATS
FT                   VAQPKLHTVQFGSLDPVVIKGGAGSFAKATRQQPNVEIDVSLSEAAALEVAKSRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSIKKRMVQRTCKMND
FT                   QGIDMLTRSLVKIFKTKSANIEYIGKRSIKVDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 384 A; 259 C; 304 G; 233 T; 0 other;

AB179909  Length: 1180  August 31, 2004 08:43  Type: N  Check: 8961  ..

       1  gattaaagca aacacaaatc tttcaaagca tccaagcaat caaagattct
      51  taaatctttc atcgttatca aagcaaccac caacagcaaa tcaaatggca
     101  gcagttacat ttgcatcagc tatcaccaac accatcacca acaaaccagc
     151  actcatcgga atggtacagt tcgggagttt cccaccagtg ccattgcgat
     201  ccaccaccgt caccacagtc gccacttcag tggcgcagcc taaattgcac
     251  acagtgcagt ttggaagtct cgacccagta gtcatcaagg gtggagcagg
     301  gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaaatctag atcgaatgcc
     401  gtgttgagaa tgcacgagga agcaaataag gagagagcgc tcttcttgga
     451  ctgggaggcg agtttgaaga gaagctcgta tgggattgct gagaacgaga
     501  aggttgtcat gacaactcgt ggcgtcagca agatagtgcc caggagttca
     551  agggcaatga agcaaaagcg tgcaagggag aggcgtagag cgcagcaacc
     601  aatcatacta aagtgggagc ccaaattgag cgggatttca attggaggag
     651  ggctctctgc gagcgcgatt gaggtagaag aagtccgcac aaagtggccg
     701  cttcataaga caccgtcaat aaagaagagg atggtgcaaa ggacatgtaa
     751  gatgaacgac caaggaattg acatgttgac acggtccctg gtcaagattt
     801  tcaagactaa gagtgccaac attgagtaca tcgggaagag atcgatcaag
     851  gttgatttca tcaggaaaga gcgaacgaaa ttcgcaagaa tccaagtagc
     901  acacctactc gggaagcgag cacagcgcga cttgtcaact ggaatggaag
     951  aaaaccattt tattgacatt ctcagcgggt actcaggcaa caaaacaacc
    1001  ataaatccag gagtagtttg cgcaggttgg agtggcatag ttgttagaaa
    1051  tggaattcta acccagaaac gaagcaggag cccatcagaa gcctttgtaa
    1101  ttagaggcga gcacgaaggc aagttgtatg acgccaggat caaagtcacg
    1151  agaacaatga gtcacaaaat tgtgcacttt