Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHZJ26.

ACC No: AB179918

Dated: 2004-08-20 | Length: 1180 | CRC: 1982587013

                !!NA_SEQUENCE 1.0
ID   AB179918   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179918;
XX
SV   AB179918.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHZJ26.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHZJ26"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6K1"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20332.1"
FT                   /translation="MAAVTFATAITNTTASKSASTGMVQFGNFPSVPLRSTVATIATTP
FT                   VVQPKLYTVQFGSLDPIVVKGEAGSSAKATCQQPSGEINASLKEAAALEVAKPKPNAVL
FT                   RMHEEMNKERALFLDWETSLTRRSYGIADNEKVIMTARGVSKIVLRSSRAMKQKRARER
FT                   RRAQQPIVLKWEPKLSAISIGGGPSANMIEAEEVRTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARIQVEHLLGKRAQRDLL
FT                   TGAEENCFIDTLSTYSGNRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 389 A; 257 C; 297 G; 237 T; 0 other;

AB179918  Length: 1180  August 31, 2004 08:43  Type: N  Check: 9670  ..

       1  gattaaagca aacacaaatc tctcgaagcg ttcaagcaac caaagatttt
      51  caaatctttc atcgttttca aagcaaccaa caacaacgca agcaatggca
     101  gcagttacat ttgcaaccgc aatcactaac accaccgcaa gcaaatcagc
     151  atccaccggg atggtacaat ttgggaattt cccatcagtg ccgttgcgat
     201  caaccgtcgc taccatagcc accaccccag tggtacaacc caagctgtac
     251  acagtacagt tcggaagcct tgacccgatt gtcgtcaagg gtgaagcagg
     301  gtcctctgct aaggcaacct gccagcagcc tagcggtgaa ataaacgcta
     351  gcctcaagga agccgcagct ttggaggttg caaaacccaa accgaatgcc
     401  gtgttaagga tgcacgagga aatgaacaag gagagagcac tcttcttaga
     451  ctgggaaacc agtttaacaa ggcgctcata tggcattgct gacaacgaga
     501  aggtcatcat gacagctcgt ggtgttagca aaatagtgct taggagctca
     551  agggcgatga aacaaaagcg cgcaagagaa aggcgcaggg cacaacaacc
     601  aattgtgctg aaatgggagc ccaagttgag cgcaatctca attggaggag
     651  gaccctccgc aaacatgatt gaggcagaag aggttcgcac gaagtggccg
     701  ttacataaaa caccatcaat gaagaggaag acggtgcaca gaagatgcaa
     751  gatgaatgat caaggaatcg acatgttaat gcgttctttg attaaaatct
     801  ttaaggcgaa gagtgcgaac attgagttca ttggaaggaa gtccattaaa
     851  gtggattttg taaagaaaga gcaaacgaag tttgccagaa tacaagtaga
     901  gcatttgctc gggaagcggg cacaacgcga cctgttgact ggtgcagaag
     951  agaattgctt cattgacacc ctaagcacct actcaggaaa taggaaaatc
    1001  ataaacccag gagtggtgtg cgctggttgg agtggcattg ttatcagaaa
    1051  cggcattttg actcagaagc agagcagaag tccttcgcaa gcctttgtga
    1101  ttcgaggaga acatgaaggg aagttgtatg acgccagagt taaggtcaca
    1151  aaggtgatga gccataaaat catacactat