Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: HBI2.

ACC No: AB179920

Dated: 2004-08-20 | Length: 1180 | CRC: 1384589540

                !!NA_SEQUENCE 1.0
ID   AB179920   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179920;
XX
SV   AB179920.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: HBI2.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="HBI2"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6J9"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20334.1"
FT                   /translation="MAAVTFASAITNAITNKPAPTGMVQFGSFPPMPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKSSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKKRTVHRICRMND
FT                   QGVDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGVEENHFIDILSRYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 390 A; 257 C; 298 G; 235 T; 0 other;

AB179920  Length: 1180  August 31, 2004 08:43  Type: N  Check: 7923  ..

       1  gataaaagca aacacaaatc tttcaaagca ttcaagcaat caaagattct
      51  caaatctttc atcgttatca aagcaatcac caacagcaaa ccaaatggca
     101  gcagttacat ttgcatcagc tatcactaac gccatcacca ataaaccagc
     151  acccaccgga atggtacagt ttgggagttt cccaccaatg ccattgcgat
     201  ccaccaccgt caccacagtc gccacttcag tggcgcaacc taaactgtac
     251  acagtgcagt ttggaagcct tgacccagta gttgtcaagg gtggagcagg
     301  gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaaacctag accaaatgcc
     401  gtgttgagga tgcacgagga agcaaacaag gagagagcac tctttttgga
     451  ctgggaagct agtttgaaga gaagctcgta tggaattgct gagaacgaga
     501  aagttgtaat gacaactcgt ggcgtcagca agatagtgcc caggagttca
     551  agggcaatga agcaaaagcg cgcaagggaa aggcgtagag cgcagcaacc
     601  aattatacta aagtgggagc ccaaatcgag cgggatctca atcggaggag
     651  ggctctctgc aagcgcgatt gaagttgaag aggttcgcac aaagtggccg
     701  ctccacaaga caccgtcaat gaagaagagg acggtgcaca ggatatgcag
     751  gatgaacgac caaggagttg acatgttgac acgatccctg gttaagattt
     801  tcaagactaa gagtgccaac attgagtaca tcggaaagaa gtcgatcaag
     851  gtcgatttca tcagaaaaga acggacgaaa ttcgcaagaa ttcaagtagc
     901  acacttactc gggaagagag cacagcgcga cttatcaact ggagtggaag
     951  aaaaccattt cattgacatt ctcagcaggt attcaggtaa caaaacaacc
    1001  ataaatccag gagtagtttg cgcaggttgg agtggcatag tcgttagaaa
    1051  tggaattcta acccagaaac gaagcagaag tccatcagag gcctttgtaa
    1101  ttagaggtga gcatgaaggc aagttgtacg atgccaggat caaagttacg
    1151  aggacaatga gtcacaagat tgtgcacttt