Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: HJ1S.

ACC No: AB179921

Dated: 2004-08-20 | Length: 1180 | CRC: -1974773007

                !!NA_SEQUENCE 1.0
ID   AB179921   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179921;
XX
SV   AB179921.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: HJ1S.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="HJ1S"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6J8"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20335.1"
FT                   /translation="MAAVTFASAITNAITNEPASTGMVQFGSFPPVPLQSTTVTTVATS
FT                   VAQPKLYTVQFGSLEPVVVKGGTGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLNWEASLKRSSYGIAENEKVIMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRALQPIILKWEPKLSAISIGGGLSASAIEVEEVRTKWPLHKTPSMKKRTVHRTCKMND
FT                   QGIDMLTRSLVKIFKAKSANIEYIGKKLIKVDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSEYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIMHF"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 389 A; 254 C; 298 G; 239 T; 0 other;

AB179921  Length: 1180  August 31, 2004 08:43  Type: N  Check: 1527  ..

       1  gattaaagca aacacaaatc tttcaaagca tccaagcaat caaagattct
      51  caagtctttc atcgttatca aagcaaccac caacagcaaa tcaaatggca
     101  gcagttacat ttgcatcagc tatcactaac gccatcacca acgaaccagc
     151  atccaccgga atggtacagt ttgggagttt cccaccagtg ccattgcaat
     201  ccaccaccgt caccacagtc gccacttcag tggcgcagcc taaactgtac
     251  acagtgcagt ttggaagtct tgaaccagta gtcgtcaagg gtggaacagg
     301  gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaaacctag atcgaatgcc
     401  gtgttgagaa tgcacgagga agcaaataag gagagagcac tctttttgaa
     451  ctgggaggct agtttgaaga gaagttcgta cggaatcgct gaaaacgaga
     501  aggttataat gacaactcgt ggcgtgagca agatagtgcc caggagttca
     551  agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgctacagcc
     601  aattatacta aagtgggagc ctaaattgag cgcgatctca attggaggag
     651  gactctccgc gagcgcgatc gaagtagagg aagtccgcac aaagtggccg
     701  cttcataaga caccgtcaat gaagaagagg acggtacaca gaacatgtaa
     751  gatgaacgac caaggaattg acatgttgac acgatccctg gttaagattt
     801  tcaaggccaa gagtgccaac attgagtaca tcgggaagaa attgatcaag
     851  gttgatttca tcagaaaaga gcggacgaaa ttcgcaagaa tccaagtagc
     901  acacttactc gggaagcgag cacagcgcga cttgtcaact ggaatggaag
     951  aaaaccattt tattgacatt ctcagcgagt actcaggcaa taaaacaact
    1001  ataaatccag gagtagtttg cgcaggttgg agtggcatag tcgttagaaa
    1051  tggaattcta acccagaaac gaagcaggag tccatcagag gcctttgtaa
    1101  ttagaggtga gcacgaaggc aagttgtatg atgccaggat taaagtcacg
    1151  aggacaatga gtcacaagat tatgcacttt