Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: HZ6.

ACC No: AB179923

Dated: 2004-08-20 | Length: 1180 | CRC: 150804685

                !!NA_SEQUENCE 1.0
ID   AB179923   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179923;
XX
SV   AB179923.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: HZ6.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="HZ6"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6J6"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20337.1"
FT                   /translation="MAAVTFASAITNAITNKPAPTGMVQFGSFPPMPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKPSEISIGGGLSASAIGAEEVRTKWPLHKTLSMKKRTVHRICRMND
FT                   QGVDMLTRSLVKIFKTKSANIEYIGKKSIKIDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 389 A; 257 C; 302 G; 232 T; 0 other;

AB179923  Length: 1180  August 31, 2004 08:43  Type: N  Check: 5964  ..

       1  gataaaagca aacacaaatc tttcgaagca tccaagcaat caaagattct
      51  caaatctttc atcgttatca aagcaatcac caacagcaaa ccaaatggca
     101  gcagttacat tcgcatcagc tatcaccaac gccatcacca ataaaccagc
     151  acccaccgga atggtacagt ttgggagttt cccaccaatg ccattgcgat
     201  ccaccaccgt gaccacagtc gccacttcag tggcgcaacc taaactgtac
     251  acagtgcagt ttggaagcct tgacccagta gtcgtcaaga gtggagcagg
     301  gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaaacctag gtcgaatgcc
     401  gtgttgagga tgcacgagga agcaaacaag gagagagcac tctttttgga
     451  ctgggaggct agtttgaaga gaagctcgta tggaattgct gagaacgaga
     501  aagttgtaat gacaactcgt ggcgtcagca agatagtgcc cagaagttca
     551  agggcaatga agcaaaagcg tgcaagggag aggcgtagag cgcagcaacc
     601  aattatacta aagtgggagc ccaaaccgag cgaaatctca atcggaggag
     651  ggctctctgc gagtgcgatc ggagcagaag aggttcgcac aaagtggccg
     701  cttcataaga cattgtcaat gaagaagagg acggtgcaca gaatatgcag
     751  gatgaacgac caaggagttg acatgttgac acgatccctg gttaagattt
     801  tcaagactaa gagtgccaac attgagtaca tcggaaagaa gtcgattaag
     851  atcgatttca tcagaaaaga acggacgaaa ttcgcaagaa ttcaagtagc
     901  acacttactc gggaagagag cacagcgcga cttatcaact ggaatggaag
     951  aaaaccattt tattgacatt ctcagcgggt actcaggtaa caaaacaacc
    1001  ataaatccag gagtagtttg cgcaggttgg agtggcatag tcgttagaaa
    1051  tggaattcta acgcagaaac gaagcagaag cccatcagag gcctttgtaa
    1101  ttagaggtga gcacgagggc aagttgtacg atgccaggat caaagtcacg
    1151  aggacaatga gtcacaagat tgtgcacttt