Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: NPL3.

ACC No: AB179927

Dated: 2004-08-20 | Length: 1180 | CRC: 1357269564

                !!NA_SEQUENCE 1.0
ID   AB179927   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179927;
XX
SV   AB179927.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: NPL3.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NPL3"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6J2"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20341.1"
FT                   /translation="MAAVTFASAITNAITNKPALTGMVQFGSFPPMPLRSTTITTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPYVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGISKIVPRNSRAMKHKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEAEEVRTKWPLHKTPSMKKRTVHRMCRMND
FT                   QGVGMLTRSLVKIFKTKSANIEYIGKKSIKIDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSEYSGNKITINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 395 A; 256 C; 291 G; 238 T; 0 other;

AB179927  Length: 1180  August 31, 2004 08:43  Type: N  Check: 8503  ..

       1  gattaaagca aacacaaatt tttcaaagca ttcaagcaac cgaagatttc
      51  taaatctttc atcgttatca aagcaatcac caacagcaaa ccaaatggca
     101  gcagttacat tcgcatcagc tatcaccaac gccatcacca ataaaccagc
     151  actcaccgga atggtacagt ttgggagctt cccaccaatg ccattgcgat
     201  ccaccaccat caccacagtc gccacttcag tggcacaacc taaactgtac
     251  acagtgcagt ttggaagcct tgacccagta gtcgtcaaga gtggagcagg
     301  gtcctttgct aaggcaacac gccagcagcc ttacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaaacctag atcgaatgcc
     401  gtgttgagga tgcacgagga agcaaacaag gagagagcac tctttttgga
     451  ctgggaggct agtttgaaaa gaagctcgta tggaatcgct gaaaacgaga
     501  aagttgtaat gacaactcgt ggcatcagca agatagtgcc cagaaattca
     551  agggcgatga agcacaagcg cgcaagggaa aggcgtagag cgcagcaacc
     601  aattatacta aagtgggagc ccaaattgag tgggatctca atcggaggag
     651  ggctctccgc gagcgcaatc gaagcagaag aggttcgcac aaagtggcca
     701  cttcataaga caccgtcaat gaagaagagg acggtgcaca gaatgtgcag
     751  gatgaatgac caaggagttg gcatgttgac acgatccctg gttaagattt
     801  tcaagactaa gagtgccaac attgagtaca tcggaaagaa gtcgattaag
     851  atcgatttca tcagaaaaga acgaacgaaa ttcgcaagaa ttcaagtagc
     901  acacttactc gggaagagag cacagcgtga cttatcaact ggaatggaag
     951  aaaaccattt tattgatatt cttagcgagt actcaggtaa caaaataacc
    1001  ataaatccag gagtagtttg cgcaggttgg agtggcatag tcgttagaaa
    1051  tggaattcta acccagaaac gaagcagaag tccatcagag gcctttgtaa
    1101  ttagaggtga gcacgaaggc aagttgtacg atgccaggat caaagtcacg
    1151  aggacaatga gtcacaagat cgtgcacttt