Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: ST19J.

ACC No: AB179930

Dated: 2004-08-20 | Length: 1180 | CRC: -593926465

                !!NA_SEQUENCE 1.0
ID   AB179930   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179930;
XX
SV   AB179930.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: ST19J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ST19J"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6I9"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20344.1"
FT                   /translation="MAAVTFASAITNAITNKPALTGMVQFGSFPPMPLRSTTVITAATS
FT                   VAQPKLHTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSPYGIAENEKVVMTTCGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEAEEVRTKWPLHKTPSMKKRTVHRICKMND
FT                   QGVDMLIRSLVKIFKTKSANIEYIGKKSVKVDFIRKGRTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGIVVRNEIPTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 389 A; 260 C; 299 G; 232 T; 0 other;

AB179930  Length: 1180  August 31, 2004 08:43  Type: N  Check: 8095  ..

       1  ggtaaaagca aacacaaatc tttcgaagca ctcaagcaat caaagattct
      51  taaatctttc atcgttacta aagcaatcac caacagcaaa ccaaatggca
     101  gcagttacat tcgcatcagc tatcaccaac gccatcacca ataaaccagc
     151  actcaccgga atggtacagt ttgggagttt cccaccaatg ccattgcgat
     201  ccaccaccgt catcacagcc gccacttcag tggcgcaacc taaactgcac
     251  acagtgcagt ttggaagcct tgacccagta gtcgtcaaga gtggagcagg
     301  ttcttttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaaacctag atcgaatgcc
     401  gtgttgagga tgcacgagga agcaaacaag gagagagcac tctttttgga
     451  ctgggaggct agtctgaaga gaagtccgta tggaattgct gagaacgaga
     501  aagttgtaat gacaacttgt ggcgtcagca agatagtgcc cagaagttca
     551  agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgcagcaacc
     601  aattatacta aaatgggagc ctaaattgag cgggatctca atcggaggag
     651  ggctctctgc gagcgcgatc gaagcagaag aggttcgcac aaagtggccg
     701  cttcacaaaa caccgtcaat gaagaagagg acggtgcaca gaatatgcaa
     751  gatgaacgac caaggagttg acatgttgat acgatccttg gttaagattt
     801  tcaagactaa gagcgccaac attgagtaca tcggaaagaa gtcggttaag
     851  gtcgatttca tcagaaaagg acggacgaaa ttcgcaagaa ttcaagtagc
     901  acacttactc gggaagagag cacagcgcga cttatcaact ggaatggaag
     951  aaaaccattt cattgacatt ctcagcgggt actcaggtaa caaaacaacc
    1001  ataaatccag gagtggtctg tgcaggttgg agtggcatag tcgttagaaa
    1051  tgaaattcca acccagaaac gaagcagaag tccatcagag gcctttgtaa
    1101  ttagaggtga gcacgaaggc aagttgtacg atgccaggat caaagtcacg
    1151  aggacaatga gccacaagat tgtgcacttt