Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: SD3J.

ACC No: AB179932

Dated: 2004-08-20 | Length: 1180 | CRC: 2132558052

                !!NA_SEQUENCE 1.0
ID   AB179932   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179932;
XX
SV   AB179932.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: SD3J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="SD3J"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6I7"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20346.1"
FT                   /translation="MAAVTFATAITNTTASKPALTGMVQFGNFPPVPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGVGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARIQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 384 A; 255 C; 306 G; 235 T; 0 other;

 AB179932  Length: 1180  August 31, 2004 08:43  Type: N  Check: 381  ..

       1  gattaaagca aacacaaatc tctcgaagca ttcaagcaac caaagatttt
      51  caaatctttc atcgttttca aagcaaccaa caacaacgca agcaatggca
     101  gcagttacat tcgcaaccgc aatcactaac accaccgcaa gcaaaccagc
     151  actcaccgga atggtacagt ttgggaattt cccaccagtg ccattgcgat
     201  ccaccaccgt caccacagtc gccacttcag tggcgcaacc taaactgtac
     251  acagtgcagt ttggaagcct tgacccagta gtagtcaaga gtggagtagg
     301  gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaaacctag accaaacgcc
     401  gtgttgagga tgcacgagga agcaaacaag gagagagcac tctttttgga
     451  ctgggaggct agtttgaaga gaagctcata tggaattgct gagaacgaga
     501  aagttgtgat gacaactcgt ggcgtcagca agatagtgcc caggagttca
     551  agggcaatga agcaaaagcg cgcaagggaa aggcgtagag cgcaacagcc
     601  aatcatacta aagtgggagc ctaaattgag cgggatctca attggaggag
     651  ggctctccgc gagcgcgatt gaagtggaag aagtccgcac aaagtggccg
     701  cttcacaaga caccgtcaat gaagaggaag acggtgcaca gaagatgtaa
     751  gatgaatgat cagggaattg acatgttaat gcgttctttg attaaaatct
     801  ttaaggcgaa gagtgcgaac attgagttca ttggaaggaa gtccattaaa
     851  gtggatttcg taaagaaaga gcaaacgaag tttgccagaa tacaagtagt
     901  gcatttgctc ggaaagcgag cacaacgcga cctgttgact ggtgcagaag
     951  agaaccactt cattgacacc ctaagcacct actcaggaaa taggaaaatc
    1001  ataaacccag gagtggtgtg cgctggttgg agtggcattg ttatcagaaa
    1051  cggcattcta actcagaagc agagcagaag tccttcgcaa gcctttgtga
    1101  ttcgagggga acatgaaggg aagttgtatg acgccagagt taaggtcaca
    1151  aaggtgatga gccacaaaat catacactat