Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: MN43J.

ACC No: AB179938

Dated: 2004-08-20 | Length: 1180 | CRC: -1269946798

                !!NA_SEQUENCE 1.0
ID   AB179938   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179938;
XX
SV   AB179938.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: MN43J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="MN43J"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6I1"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20352.1"
FT                   /translation="MAAVTFATAITNTTASRSASTGMVQFGNFPPVPLRSTTTTTVATP
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPKPNAVL
FT                   RMHEEANKERALFLDWEASLRRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKSSGISIGGGLSASAIEAEEVRTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLVRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNKRIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 383 A; 252 C; 308 G; 237 T; 0 other;

AB179938  Length: 1180  August 31, 2004 08:43  Type: N  Check: 1242  ..

       1  gattaaagca aacacaaatc tctcgaagca ttcaagcaat caaagatttt
      51  caaatctttc atcgttttca aagcaaccaa caacaacgca agcaatggca
     101  gcagttacat ttgcaaccgc aatcactaac accaccgcaa gcagatcagc
     151  atccaccgga atggtacagt ttggaaactt cccaccagtg ccattgcgat
     201  ccaccaccac caccacggtc gccactccag tggcgcagcc taaactgtac
     251  acagtgcagt ttggaagcct tgacccagta gtcgtcaaga gtggagcagg
     301  gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaaacctaa accgaatgcc
     401  gtgttgagga tgcacgagga agcaaacaag gagagagcac tctttttgga
     451  ctgggaggcc agtttgagga gaagctcgta tggaattgct gagaacgaga
     501  aagttgtaat gacaactcgt ggcgtcagca agatagtgcc cagaagttca
     551  agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgcaacaacc
     601  aattatacta aagtgggagc ccaaatcgag cggaatctca attggaggag
     651  ggctttctgc gagcgcgatc gaagcagaag aagttcgcac aaagtggccg
     701  ttgcataaaa caccatcaat gaagaggaag acggtgcaca gaagatgcaa
     751  gatgaatgat caaggaattg acatgttagt gcgttctttg attaaaatct
     801  ttaaggcgaa gagtgcgaac attgagttca ttgggaggaa gtccattaaa
     851  gtggattttg taaagaaaga gcaaacgaag tttgccagag tgcaagtagt
     901  gcatttgctc ggaaagcggg cacaacgcga cctgttgact ggtgcagaag
     951  aaaaccactt cattgacacc ctaagcacat actcaggaaa taagagaatc
    1001  ataaacccag gagtggtgtg cgctggttgg agtggcattg ttatcagaaa
    1051  cggcattttg actcagaagc agagcagaag tccttcgcaa gcctttgtga
    1101  ttcgaggaga acatgaaggg aagttgtatg acgccagggt taaggtcaca
    1151  aaggtgatga gccataaaat catacactat