Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CH6.

ACC No: AB179939

Dated: 2004-08-20 | Length: 1527 | CRC: 1969072026

                !!NA_SEQUENCE 1.0
ID   AB179939   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB179939;
XX
SV   AB179939.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CH6.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CH6"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6I0"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20353.1"
FT                   /translation="SDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMIIQHLRMKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGEDDV
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATIDESPI
FT                   MDIALVQEHFGKIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHVPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPIDLSEVPRANTELTPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNISDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGRPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 491 A; 320 C; 366 G; 350 T; 0 other;

AB179939  Length: 1527  August 31, 2004 08:43  Type: N  Check: 2948  ..

       1  tctgacggga tttctcgcca ttttatgagt gaatatggag cactcgaggc
      51  agttcaccat caaaacacca acgacatgag caagttctta aagctgaaag
     101  gcaaatggaa caaaacgctt atcacgcgtg atgtgttagt gatttgtgga
     151  gttcttggag gtggaatatg gatgatcatc caacacctgc gtatgaagat
     201  ctccgaaccc gtgacccacg aggcaaaagg caagaggcag agacagaagt
     251  tgaagtttcg caatgcccgc gacaacaaaa tgggtaggga ggtttacgga
     301  gaagacgacg tcattgaaca cttctttgga gatgcctaca caaagaaggg
     351  aaagagtaaa ggcagaaccc gtggcctcgg ccataaaaac aggaaattca
     401  tcaatatgta tggattcgat cctgaagact tctctgcagt tagattcgta
     451  gatccactca caggggcaac gatagatgaa agtccaatca tggacatagc
     501  ccttgtgcag gaacatttcg gaaaaatacg gatggattta cttggagaag
     551  acgaactgga acccgatgag ttgcgaatga ataagacgat tcaggcttac
     601  tacatgaata acaaaacagg taaagccctg aaagtggatt tgacaccaca
     651  cgtaccacta aaggtatgtg accttcatgc aacaattgct ggtttcccgg
     701  aacgagaaca cgaactgagg caaactggaa aagctcagcc tatagactta
     751  agtgaagtac ctagagctaa cactgagcta actccggttg accatgaaag
     801  tagctccatg tttagagggt tgcgcgacta caacccgata tccaataaca
     851  tttgtcatct tacaaatatt tcagatggag catcaaattc gttgtatggg
     901  gttggttttg gaccactcat attaacgaac cggcatctct ttgaaaggaa
     951  taatggtgaa ctcgtgataa agtcgagaca tggtgagttt gtgattaaga
    1001  acacgactca gctacacttg ctaccgattc cggacaggga ccttctgcta
    1051  atccgactac ctaaagacat cccacccttc ccgcaaaaac tgggatttag
    1101  acaacctgag aagggtgaga ggatctgtat ggtaggttct aactttcaaa
    1151  caaagagcat tacgagtgtg gtttctgaga ctagcacaat aatgccagtg
    1201  gagaatagcc aattttggaa gcactggatt agcaccaagg atggccaatg
    1251  tggaaggccg atggtgagca caaaggatgg aaaaatactt gggctacaca
    1301  gcctggcaaa tttccaaaac tccatcaact actttgctgc cttcccagat
    1351  gattttgctg agaagtacct ctacactatt gaggcacacg aatgggtcaa
    1401  gcattggaag tataacacca gtgcaattag ttggggctcc ctaaatatac
    1451  aagcatcgca gccagcgggc ttatttaaag tgagcaaact aatatcagac
    1501  cttgacagca cagcggtgta tgcgcaa