Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHN3.
ACC No: AB179953
Dated: 2004-08-20 | Length: 1527 | CRC: -1225974613
!!NA_SEQUENCE 1.0
ID AB179953 standard; genomic RNA; VRL; 1527 BP.
XX
AC AB179953;
XX
SV AB179953.1
XX
DT 25-MAY-2004 (Rel. 79, Created)
DT 20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHN3.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tan Z., Wada Y., Chen J., Ohshima K.;
RT "Inter- and intralineage recombinants are common in natural populations of
RT Turnip mosaic virus";
RL J. Gen. Virol. 85:2683-2696(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /db_xref="taxon:12230"
FT /mol_type="genomic RNA"
FT /organism="Turnip mosaic virus"
FT /isolate="CHN3"
FT CDS <1. .>1527
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q6L6G6"
FT /product="polyprotein"
FT /protein_id="BAD20367.1"
FT /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT TDITLVQEHFGNIRMNLLEEDELDSNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNEFVPVDHESNSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 490 A; 334 C; 357 G; 346 T; 0 other;
AB179953 Length: 1527 August 31, 2004 08:43 Type: N Check: 2247 ..
1 accgatggaa tatctcggca tttcatgagt gagtttggag ctcttgaggc
51 agttcaccat caaaatacca gcgacatgag caaattcctc aagcttaagg
101 gcaaatggaa caaaacgtta atcacgcgag atgtgttggt gctttgtgga
151 gttctcggag gtggattgtg gatggttatt cagcacctac ggtcaaagat
201 ttctgaaccc gtaacccatg aagcgaaagg caaaagacaa aggcagaaac
251 taaagtttcg caatgcccga gacaacaaga tgggtagaga agtatacgga
301 gatgatgata ccatagagca tttctttggt gatgcttaca caaagaaagg
351 gaagagcaag ggcagaacac gtggtctcgg acacaaaaac aggaagttca
401 tcaacatgta tggatttgat cctgaagatt tctctgcagt tcgtttcgtg
451 gatccactca caggagcgac gttggatgac aacccgctca cagacatcac
501 ccttgtgcaa gagcactttg gtaacataag aatgaacttg ctcgaggagg
551 atgagctgga ctcaaatgaa atacgtgtga ataagacaat tcaggcctac
601 tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca
651 catacctctc aaggtgtgtg atcttcatgc aaccattgct ggattcccag
701 agcgagaaaa cgagctgagg cagactggaa aggcccagcc cattaacata
751 gacgaagtgc caagagctaa taatgaattc gttccagtgg accacgagag
801 taactccatg ttcagagggt tgcgtgacta caacccaata tcaaacaaca
851 tttgtcatct cacaaatgtt tctgatggag catcaaactc gttatatgga
901 gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa
951 taacggtgaa ctcgtaataa aatcacgaca tggtgagttc gtgattaaaa
1001 acacaaccca gctacatttg ctaccgattc cagacagaga tcttctacta
1051 atccggttac caaaggacat cccacccttt ccacagaaat tgggtttcag
1101 gcaacctgag aaaggtgagc gaatctgcat ggtggggtcc aacttccaaa
1151 ccaagagcat aacgagtgta gtctctgaga ctagcacaat aatgccagtg
1201 gaaaacagtc agttttggaa acactggatt agtacgaaag acggccaatg
1251 cggaagtcca atggtgagca cgaaagacgg gaaaatactt ggattacaca
1301 gcctagcgaa cttccagaac tccatcaatt actttgctgc tttcccagat
1351 gattttgccg agaagtatct tcataccatt gaagcacacg agtgggtcaa
1401 gcattggaag tataacacta gtgccatcag ctggggctct ttgaatatac
1451 aagcatcgca accgtcaggt ttgttcaaag taagcaagct aatctcagac
1501 ctcgacagca cggcagtcta tgcacaa